RNA id: XM_036976317.1


Basic Information

Item Value
RNA id XM_036976317.1
length 2156
RNA type mRNA
GC content 0.53
exon number 5
gene id si:ch211-63o20.7
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 40721526 ~ 40732661 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGGTTCTGTAGCCTATCACAGCGCACGTTTGTCTAAGAGCGGGACGTTCCAAAGGGGAGACGAAAGTTCTGCAAATCCATCTTTGTTTTCATTTGACTTGAAGATGTTGGTGTCCGTTTCAGATTCAACTGTTAGTCAAATTAACAGATACACATAGTTATAATGAACTTTTAGTGAAAAAATCTAAATGAACTCTATGGGGACATGGTAAACTCAAACACTGACTTCAAATCAAGAATCTAAGAACAATCCAAGTTACTGTTTATATAGTGAGTCAGAAGATGGAGGAGTTGTACACCCTTGAGAGGGAGGTCGGACGGGGCAGTTACGGGGTGGTCTTCGAGGGCCACATGGCTAAAACAGGCGAGCGGGTTGCCATAAAACGCCTGCCCTGCAGTAGCCCAGAGTGCATCGAGCTTTACCTCCAGGAGCTGTGGGCTATGAGAACCACGGCCAAGAACCATCCCAATGTCATCGCCCTCCATGGCTGCCTGCTGCAGACCGGACCCAAGACCCTGCAGCCCCTCAGGCCAGGCAGGCTGCCTCTGGACCTGGTGGAGAGCGCCCTAAAAGGGAGCGTGGTGGGGATAAAGCAGAGCCAGGAGGAGAAAAGGACTAAGTCAGACTCCTCCCGGTCAAAAACTAAGAACAGAACTAACTCAGGTGGTCTCTTCAGAACCAAGAGCAGATTGAGAACTAACTCCGAGTCAGACTTCTTCAGGTCCAAATCCCAGGAATCAACTAACTCTGACTTATCCATGTCCAAAACGCCTGTGAGGAAAATTTCTGGCCTCTCCAGGCCCAGAAAGAGACCAGCCCCCACAGGAGAGAAGGACAACCGTGGTCCCAAGCGCTGCTTGGCCCTGTGGCTGGTGATGGAGTACTGTGATGGGGGAGACCTGAACCACtacctgttgtccagacctccaGAAAGCCAGAGAAACCACGGCGTGGTCCAGCAGCTAAGCTCAGCCATGGCCTTCCTCCACCGCCTCCGCATCGTACACAGAGACCTGAAGCCAGATAACGTGCTTGTCTGTCTCACGCGTAACGGGCCTCTCATCAAGGTGGCTGACTTTGGCCTGAGTAAGATGAGCGTTGAGGGGGGCCAGGGGACGGAAGGAGACACCAGTCTGACCAGACAGCACTTCTCCTCTACGTGTGGCTCTGACTTCTACATGGCTCCAGAGGTGTGGGGTGGCCTCACCTACACAGCCCAGGCAGACATCTTCTCCCTGGGGGTGATGTTCTGGGCCGTCCTGGAGAGACTCACCTTCCTGGAGGAGGGCTCCACACAGGAACAACTGGGTGCGTATGTGTGTAAGGCTCGCTGGCTGATGCCACTGGGCGAGGCGTTGTGTGAGAACCCAGACCTCCAGGTGTGCATCCCCATGAAGTCCCGCCGCGCCCCCCCTCTACCGCCCCCTCCTGGCCAGGCTGTCTGCACCCTGCTACTGGACATGCTGGCCTCAGACCCTGACGCCCGGCCCACCGCCGCCCAGCTGGAAGACAGGGTCCGCTCTGCCATGGAGGAGGACGCACTGTGACGGGGTTTGCGTCCCAAAggataaccctattccctatatagtgcactactttagaccaggaccctttAGGGTTTTAGTTAAAAGTAGTGTATTGTTACAGGGATATTGGACCCTGATCATAGTAAGTGCCCTAGATGGGGAATGGGGTGCATATTGGGATgcagagctggtgacagagcttCTATATCCAATGTGCTGAACACTCATAGTCAGTCTTCTCTACTAGTGTGAGGGACCATGATGGCGTTAAACGTTGCCACCTGTCCGTACCATGCTAACCACTGATGCTTCTCTTCTTCTTATCTATATATTCAGTTGTATGTGGTCCCTACAGAAATATAACCCACAACCTTGGTGACCCAATGCTCTAGCCATCTAATGGTCAAAAGAAACGTGTGCTGACTTGCCAGCACCATGCACGCACCAAGTCACCAGGAACAACTACTGCTACATCGGAACCCGTGGTTCTGTACCTAGCCTTAAATATGCTTTTGGGAAAACCGGGCCCTACTCTTCTGACTCTGAGGGAAGCTTACTGTTCTTTAGGCACATCAATATATCGAGTgagtgagtgagtgagtgggtgagtgagtgggtgagtgagtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU398196 lncRNA upstream 5467 40715656 ~ 40716059 (+) True G351816
TU398235 lncRNA upstream 22228 40699076 ~ 40699298 (+) True G351847
TU398231 lncRNA upstream 30487 40690336 ~ 40691039 (+) True G351843
TU398228 lncRNA upstream 33541 40687346 ~ 40687985 (+) True G351840
TU398212 lncRNA upstream 43356 40677676 ~ 40678170 (+) False G351826
TU398473 lncRNA downstream 3943 40736237 ~ 40736542 (+) True G351940
TU398495 lncRNA downstream 26201 40758495 ~ 40764040 (+) True G351960
TU398498 lncRNA downstream 45070 40777364 ~ 40778213 (+) True G351963
TU398510 lncRNA downstream 132227 40864521 ~ 40868165 (+) True LOC110521111
TU398548 lncRNA downstream 145363 40877657 ~ 40878233 (+) True G352002
XM_021601088.2 mRNA upstream 7502 40708662 ~ 40714024 (+) False LOC110522626
XM_021601089.2 mRNA upstream 7502 40709292 ~ 40714024 (+) True LOC110522626
XM_036976314.1 mRNA upstream 46949 40650654 ~ 40674577 (+) False LOC110521109
XM_036976315.1 mRNA upstream 46949 40650654 ~ 40674577 (+) False LOC110521109
XM_036976312.1 mRNA upstream 46949 40650655 ~ 40674577 (+) False LOC110521109
XM_036976321.1 mRNA downstream 46064 40778358 ~ 40868194 (+) False LOC110521111
XM_036976322.1 mRNA downstream 46064 40778358 ~ 40868194 (+) False LOC110521111
XM_036976323.1 mRNA downstream 46066 40778360 ~ 40868194 (+) False LOC110521111
XM_036976324.1 mRNA downstream 63708 40796002 ~ 40868194 (+) False LOC110521111
XM_036976327.1 mRNA downstream 136046 40868340 ~ 40887504 (+) False hmbox1b
TU397710 other upstream 584753 40134687 ~ 40136773 (+) False G351441
TU397708 other upstream 584753 40134966 ~ 40136773 (+) True G351441
TU396863 other upstream 1332052 39388589 ~ 39389474 (+) True G350665
TU396861 other upstream 1332091 39388141 ~ 39389435 (+) False G350665
TU396290 other upstream 1816752 38903730 ~ 38904774 (+) True G350211
TU398718 other downstream 257865 40990159 ~ 40990505 (+) True G352136
TU398979 other downstream 477953 41210247 ~ 41210998 (+) True G352340
TU398983 other downstream 478819 41211113 ~ 41213949 (+) True G352341
TU399156 other downstream 633907 41366201 ~ 41366607 (+) True G352477
TU399921 other downstream 1392382 42124676 ~ 42125759 (+) True G353125

Expression Profile