Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU398450 |
| length | 837 |
| lncRNA type | sense_over |
| GC content | 0.45 |
| exon number | 2 |
| gene id | si:ch211-63o20.7 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048568.1 |
| NCBI id | CM023222.3 |
| chromosome length | 46841314 |
| location | 40721526 ~ 40732661 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU398196 | lncRNA | upstream | 15691 | 40715656 ~ 40716059 (+) | True | G351816 |
| TU398235 | lncRNA | upstream | 32452 | 40699076 ~ 40699298 (+) | True | G351847 |
| TU398231 | lncRNA | upstream | 40711 | 40690336 ~ 40691039 (+) | True | G351843 |
| TU398228 | lncRNA | upstream | 43765 | 40687346 ~ 40687985 (+) | True | G351840 |
| TU398212 | lncRNA | upstream | 53580 | 40677676 ~ 40678170 (+) | False | G351826 |
| TU398473 | lncRNA | downstream | 3576 | 40736237 ~ 40736542 (+) | True | G351940 |
| TU398495 | lncRNA | downstream | 25834 | 40758495 ~ 40764040 (+) | True | G351960 |
| TU398498 | lncRNA | downstream | 44703 | 40777364 ~ 40778213 (+) | True | G351963 |
| TU398510 | lncRNA | downstream | 131860 | 40864521 ~ 40868165 (+) | True | LOC110521111 |
| TU398548 | lncRNA | downstream | 144996 | 40877657 ~ 40878233 (+) | True | G352002 |
| XM_021601088.2 | mRNA | upstream | 17726 | 40708662 ~ 40714024 (+) | False | LOC110522626 |
| XM_021601089.2 | mRNA | upstream | 17726 | 40709292 ~ 40714024 (+) | True | LOC110522626 |
| XM_036976314.1 | mRNA | upstream | 57173 | 40650654 ~ 40674577 (+) | False | LOC110521109 |
| XM_036976321.1 | mRNA | downstream | 45697 | 40778358 ~ 40868194 (+) | False | LOC110521111 |
| XM_036976322.1 | mRNA | downstream | 45697 | 40778358 ~ 40868194 (+) | False | LOC110521111 |
| XM_036976323.1 | mRNA | downstream | 45699 | 40778360 ~ 40868194 (+) | False | LOC110521111 |
| XM_036976324.1 | mRNA | downstream | 63341 | 40796002 ~ 40868194 (+) | False | LOC110521111 |
| XM_036976327.1 | mRNA | downstream | 135679 | 40868340 ~ 40887504 (+) | False | hmbox1b |
| TU397710 | other | upstream | 594977 | 40134687 ~ 40136773 (+) | False | G351441 |
| TU397708 | other | upstream | 594977 | 40134966 ~ 40136773 (+) | True | G351441 |
| TU396863 | other | upstream | 1342276 | 39388589 ~ 39389474 (+) | True | G350665 |
| TU396861 | other | upstream | 1342315 | 39388141 ~ 39389435 (+) | False | G350665 |
| TU396290 | other | upstream | 1826976 | 38903730 ~ 38904774 (+) | True | G350211 |
| TU398718 | other | downstream | 257498 | 40990159 ~ 40990505 (+) | True | G352136 |
| TU398979 | other | downstream | 477586 | 41210247 ~ 41210998 (+) | True | G352340 |
| TU398983 | other | downstream | 478452 | 41211113 ~ 41213949 (+) | True | G352341 |
| TU399156 | other | downstream | 633540 | 41366201 ~ 41366607 (+) | True | G352477 |
| TU399921 | other | downstream | 1392015 | 42124676 ~ 42125759 (+) | True | G353125 |
