RNA id: XM_036976324.1


Basic Information

Item Value
RNA id XM_036976324.1
length 8468
RNA type mRNA
GC content 0.51
exon number 32
gene id LOC110521111
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 40778358 ~ 40868194 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCTAATGGACCTGGGTTCCGGGaccAGTGGGGAGAAGGTCAGTAAGCTGAGTCTGGTGGATCTGGCTGGCAGTGAGAGAGCTGCTAAGACTGGAGCTActggagagagaatgaaggaggggAGCAACATCAACAAGTCTCTGAGCACGCTGGGCCTGGTGATCTCAGCGCTGGCAGACCAAGGAGCCGGGAAGAACAAGACCAAGTTTGTTCCCTACAGAGACTCAGTTCTCACCTGGCTACTCAAGgacaGTCTGGGTGGTAACAGTAGGACAGCCATGGTGGCCACGGTGAGTCCAGCAGCTGATAACTATGACGAGACGTTGGCCACGCTGCGCTACGCTGACCGGGCTAAGAGCATCGTCAACCACGCCGTCGTCAACGAAGACCCCAACGCACGCATCATCAGAGAGCTacgggaggaggtggagaaactACGAGACCAGCTCACTGAGGCTGAGTCTATGAAGGCTCCAGATTTGAAGGAGAGGCTGGAGGAGTCCGAGAAACTGATTCAGGAGATGACAGTTACCTGGGAACAGAAACTACGGAAGACTGAGGCAGTGGCTcagGAGCGACAGAAACAGTTGGAATCTCTAGGTATCTCTCTCCAGTCGTCTGGCATCAGAGTGGTAGACGACAAGTGTTTCCTTGTCAACCTCAACGCCGAccctgcactcaatgagctgctGGTTTACTATCTAAAGGAGCACACGCGTGTTGGCTCAGCTGACTCTCAGGACATTCAGCTGTGTGGTATGGCCATCCACCCTGAACACTGTGTCATCAACATCACCGCTGAGACTGGAGTGGTGCTCACACCACACCGCAGCTCTCGtacGTGTGTGAATGGCTCTTCAGTCACCAACCCAGTCCAGCTTCACCATGGAGACCGGATCTTGTGGGGAAACAACCACTTCTTCAGGATCAACCTGCCCAGACACCTGGCCCATGCGGGGGGTGAGGATGAGGCGGGTGGTGTGATGAAGAATTGCCTCAGTACTGACCAGTTGGAAGTGGACTTTGATACGGTCAGCAATGTGTCCAGTGAGGTCAGCTTTGGCTACGAGTTCGCCCAGACAGAGGTCATGATGAAGGGCATGGGCAGCGATGaccCCATGCAGTCTGTCCTCCAGACGTTGGAGCGACAGcacgaggaggagaagaggacggCTCTGgagcgacagagacagatgtaCGAGCAGGAGCTGCTGCAGCTGAGGAAGCGGCTCCCTCCTGCAGAGAATCACACTCTGCTGCTGCCGAGCCCTGGGCCTGCAGACCTGGAGCCAGCCGGTCCCTCAGCAGCATCGATCGCATCATCACCCTGCGCCCAGACACGCATGCGGAGATGGAGCGAGGACAGAGAGGCCATGATGACTCGTAGCCTGCGTAGACTGAAGGAGCAGATCGTCAGAGCTAACCTGCTGGTGCAGGAGGCAGGCTTCATAGCTGAGGAACTCAACAAGAGGACGGAGTACCTAGTCACACTGCAAATACCTGCTGCTAACCTCGACGCCAACAGGAAGCGTGATGCGGTGCTAAGTGAGCCCGCGGTGCAGGTGAGACGTAAGGGTAAAGGGAAACAGATCTGGGCTCTGGAGAAGATGGAGAATAGACTGGTGGACATGAGAGAACTGTACCAGGAATGGAAAGACTACGATGAAGACAACCCTGTAATGCGTTCCTACTTCAAGCGTGCCGACCCGTTCTTCGACGAGCAGGAGAACCACAGTCTGATAGGAGTGGCCAACGTTTTTCTGGCCTGTCTCTTCTACGACGTCAAGCTGCAGTACGCTGTACCCATCATCAACCAGAAGGGAGAGGTTGCAGGGCGTCTACATGTGGAGGTGTGGCGAGGGAGCGAGGGGCTGGAGAAAGGAGAGACCAGTCCAGATGGCGAGACACAGGAACGCAAAATAGAGTGTGTGGTCAGGATCCTGCAGGCTACAGGTCTTCCTCGCCACCTGTGTAACTTTGTGTTCTGCCAGTACCATTTCTGGGGGCAGGATGAGCCTGTGTTCATTGCCCCGGAGGTGGTGCCCACACCCCCGTCAGCCACCAGCAGAGATCCCCTCTGCACCGTACTTTTCGACAGTAGCAAGGagctggaggtgtgtgtgtccgAGGAGTTTGTGGAGTTTGTGGCGGAGGGGGCAGTGGCCATCGAGGTGTTTGGACATAAACAGGTGAACCACCGCAGGAACCTGGCTCTTTGGGATCTGGAAGTCATTCAGGCCAAGACACGAACCCTCAGAGAGAGGTGGAGTGAGGTGACTCGTAGGCTGGATCTCTGGGTTCAGGTGTTGGAGCTGAATGACGCAGGAGAGTTCACCCCTGTAGAGGTCCTACCACCCAAGGACGTACGTACCGGGGGCATCTTCCAACTCAGACAGGGCCAGTCTCGTCGTTTGCAGGTGGAGGTACGGTCCGTACCTGACTCAGGAACCATGCCCCTCATCGCCACAAACATCCTCTCTGTATCCATTGGCAACGTGGAGGTACGCGAGATCTGCCGCTGGGATGAGGACGTGGACAGCTATCAGgaaggTGACCTGGAGAGGTTGAGGGACCAGTGGCTGACCACTCTCACTAAGAGGCAACAGTACCTGGACCAGCACCTGCAGAAGATGGTCCAAAAGCCCGATAAGTCAGAGGATGACGTGGAGAGGGAGGCCCAGCTGTTAGAGTGGCGTTTGACCCTGACAGAGGAACGTAACGCCGTCCTGTTACCTTCGGCTGGTAGCGGGATCCCTGGAGCCCCCGCTGAGAgAGATCCTGTTCCTGGGATGGAGGCACACATTCCTGTTCTCTTCCTGGACCTCAGTGCTGATGATTTCCAGGATAACCTATCTGCTCCACTGGCTGGGGGTCTAGATGCCATGCTCAACCAGGAGGATGAGGATGCGTTTTTTCACTTGCACATCGTCAAGCACTACgatggaggagagGTTGGTGCAGAGGCGTCGTGGGACTCCACGGTACATAACTGTCCCCAGCTGAGTCGCAGTGTGTCAGCTGACCTCAGGGTGTACCTGATCGTCAGGGTCGTAGTTCAGCTCTCTCACCCTGCCAACATGCACCTGGTCCTCCGAAAACGAATCTGTGTCAACCTAGCTGGACGACAGGGTTGGAGTCTGTTGAAGAGGATGTCTCATCGCAGCACCATCCCTGGTTGTGGAGTCACCTTCGAGATCGTCTCCAACATCCCTGGGcatGTCCAGGgtccagaggacagagagatgctggCCAGACTAGCAGCCAGTGTTGATGTTCAGGATGTCCAGTCAGGGGACAGTGAGGCTGCCATAGAGAAGTACCTCCGCAGTGTCCTGGCTGTAGAAAATATACTCACCCTGGACCGACTACGACAgGAAGTAGCAGTAAAGGAGAAGTTGTCTGTCAAGGCCAAGTCTCCAAGTCGTGCTCTCAGCTCTCCTAACGTGAACCGGCTGTCAAGATCCTGGAGCAGACAGGATCTGTCTTCCAATCACAGGCTAGATGACAACAAGGGCTGGTCAGAGAGTAACCAGGACCTGTCAGTGTTCTCTCCACCGTCCAACTCCAGACGCACCCTGCCTAGCTCCGCTCCGCCTCTGGCCCAGAACATCCACCCTGAGACGAGTCTCTCACGGTATGCTCCTGCTACCTCTTTTTTCTCCCCAGTCAAGGCTCTGGTTCCTCCTGTCCCTAAACTGCTAAAGTCCCTGTTCCCAaccagggaggagaagagagacctgACCCATGTCCCACAGCAGCCTCTCCCTCAGAGCCTACCTCGCATTGTAGTGCAGTCCGCAAGTGTTGAAGAGGACATGGATACAAAACTTAGTCGTCACTTGGTTCCCATTGGGGTAATCGTCCCCCCGAAGTGCCAATCAGAGGCTGGGAAAACCATGCCCCTCCCACCGGCTATCATCCCTCCGCTCATCCCTGAGATAGAAGACCCCTTCCCCAGTCCGGTCAGCGAGGCATCCAGTGGCTACATGTCCACCAGCGTCTCCACGGCAACCCTGTCAGAGGCTTACCTGATTTGTGGGGACCTCGGTCTGTCAGCCAATCTCAATCCAGATGGCTTTGAGGTGACGCACAGGTCGTTCGAGTCCGACATCGGTCGCTGTCTTCATCAGGAGTCTAACATGGCCgaccaggaggaagagagggccaCTGCTACTGACCTGGAGGcttcagagaaacagaggacTGATACTAGTTCTCCCCAGGCAGACAGGACTGATATTGATACACTACGAGCAGACTCTTCTTTCCCATTGGAACCACATGGAACCTCCGCAGAACCTCTTCTCATATCAAAACCCTATAAATCCTCAGGAGAACCTGAAGATATGACTCCACCAGAGTCACTGACACACAAGTTTACACAAGAATACTACAGACTACTACCGTGTGAAGAATCAATCCAACCAGAGTCACTGACACCGTCTACACAAGAACAGTCTGTAGTATCTAATGAGTCTGAACCACCAGTCCAGCCATTCAAGTCTGTACAAGAACAACTGAGACAGTCTTCACCAGACAAGTCAACAGAAAAACTGTCTGTAGAATTAGACCAGTCAGAACCACCAGTCCACATAAAAGACCCGGTCCAGTTAGAACAACCACCAGTGGAGCCAAAGCCACCTCGGGAACAGCGTGAGGCAACAGCTGAGTCAGCACCTCTAGACCAGCTAGCACCTCTAGACCAGCTAGCACCTCTAGACCAGTCAGCACCTCTAGACCAGTCAGCACCTCTAGACCAGTCAGCACCTCTAGATCAGCTAGCACCGGCAGACCAGCCTGAACCTGCACTTACCCCTGTAAAGCTTGCACCTAGCCAGCCAGCCGAAGCTCCAGCCCTAGCTCCAGCCCTAGCTCCAGCCCCAACCCTGGCTTCAGCTCCAATCACTGCCATAACTCCTGCTCCTGTCCCACCCAAAGCCCCTCTCCTAACCACTGTCCCAACCCTTCTTCCAGCACTAGTTGTCAAACCTCCCAGTAGCTCGGCAGCAAACCCATTCAATATTCAGAAAGTAAAGACGTCCGATCTGAAGTCCTTCCATCCTATCGTAAATGAGGATGAGAGCCAGGCCAGGAACAGTGGTCTTAGTGctgatctctctcttcctctggatATCCTCTCTGATTCAGACGAAGGAGTCACTGACACAGCCACAGAGGTGCCTGACTGGCTGAAGGAGGGGGAGTTTGTGACTGTAGGAACTAATAAAAGTGGCACTGTGCGCTACGTGGGACCTACGGATTTCGCAGACGGAACCTGGGTTGGAGTGGAGCTGGACTTACCTGCGGGGAAAAACGACGGGTCTGTGGGTGGAAAGCACTACTTCCACTGTAACCCTGGTTACGGGGTGTTGGTGCGTCCTGATAGGGTGAGCCGTGGAGGAGTCGGGGGCGGGGCTAAGGAGAAGCGGCGACAGCAGCAGAAGCGTCGCAGTGCTAACCTATCAGGGTCCAGCCCTAACCTGGCTGCCCTCACTGCCCTGGCCAAGGGAGATGGGACTGGGGCCAGTCGCAAAGGAGACAATCGTAAATCCTGGAACAGCTGAGAGGAGAGTGTAGCAAGGTTGGGGTTAATTtaatttcaattcagtcaattcaagAAGGAAACTGGAATTACAATTTCAATTTCCCCTGAACACTTCTCTAGAGATGCATTGAGGAAAATTTGAAATTcgaatttcagtttactttccGAATTGCTGGAATTGAAACGAGATTGACCCCAACCTGGTGGGTACTAGACACGACGCAACGCCACAACCAACTAGTAGAGGTGCAACCCGAAAACCACAGCAACATATCAAGACATAAGAGGTGCACCGTTTTCTTGTTTTAAATGTTCAGTCACCGATCAACAGGTGGAGGAGAGTTAAGTTACCCCCTAgtcactgatcttgggtcagtttgaCTTTTTCCCCACTCATGGATAAGGTtagtattgggggggggggggattacgaACAAAAGATTGAACAACTTTTGGCCAAGGTATCCGTGGAATAAGTTTACCGTGTTTAATACAATACAATGTAATAGTAGTAATTTATGTTCTTAACCCTGTGGAGGCTCCCTggaggctcacagggatattggtatccacagtaCTCCACCAAgtatattttctttctttttctttacaTAAATGCACTGTGATTCAAGTTCTAACATGGCAAAGTCTTTGCCTCATGGCGAAATGTGCAGAATTCCAGGATGATGGTTTTAAAACCGCAACGTTTTATTCTCCGATGCCAAGAGGCGGgccttttttaaaatgttctttCTCCGGGCCCTCGACTTGTTTCGTTCAGCCTTACACTGCAGACGGCATAGTAAAACGCCTTGTAGGGTGTTTTTAACACACTGGAGATGTCTTCTGATTTATGAGCGGGTCCTTGTTGAATTTTCTATCACAAAAGGGGTCCCAGGCCCCAAACAGTTTGAGAACCCCTGACCAAGGGGAAACTTCCAGAGCTTTCTTTCATATCATCTGAATGTaattttttttgtctgattggGTCTCTCAGGTTCTCAAATAACACGTGCCATATTTTATTTACCAGGGTTGCGATCAATTCCATTTCATTTCAGGAAATACACAAATTCCAATTctattcaatgcttttcaattaggaatttggtttactttctgaatctACTGAAATTTAAATGGAATTATCCGCAACCCTGGTTATTACAACTGGTTATTACAACTGGTTATTACAACTGGTTATTACAACTGGTTATTACAACTGGTTATTACAACAGTGTGGCAGAACAATATGTTATCATGATCTGTTTTTAGCTAACAGGAAATATTCTGTGTGTATTAACTTTACTTAAACTGCTTGATTGGATCATTTTATGTTTGGATGTTATGTTATAAGGTTTTGGGATAGTGTGGGACAGGTAGAATGCAACCTGGTATGTGTTtctatgtatactgaacagaaatataacgtaacatgtgaaatgttgtcccatgTTTTAATGATCCCAGAAATGATCCATATGTTCAGAAAGCTTATTattctcacattttgtgcacatattttacatccctattagtgagcatttttcctttgccaggataatccatccaccagacaggtgtggcatatcaagaagctgattaaacagcatgaccataACACAGGTGCACCTGGGGATGCTGTGGggataaaatgtgcagttttgtcacacgattccacagatgtctcaagttttgaggagcgtgcaaatggcatgctgactacgggaatgtccaccagagctgttgccagagaatttaatgttaatttctctaccataagccacctccaatgtcgttttaaagaatttagcagtatgtccaacctgcctcacaaacgcatgtaaccacaccagccagcttcttcacctgcgggattgtctgagaccagacagctgATTAAACTTTTTTTAATAtactttttacccccttttctccccaattggtagttagtcttgtcccatcgctgcaactgccATACAGACTtgagagaggtgaaggtcgagaaccatgcgtcctccgaaacacgaccctgccaagccccactgcttcttgacacattgctcgcttaacccgggAGCCAGCCGCAACAATGTATCAGAGGAAAcgccgtacaactggcgaccgtgtcagcgtgcatgtgcccggttccgccacaggagtctctagagcgcgatgggacaaggacacccCGGCCGGCtaacccctcccctaacctgggccaattgtgcaccgcttcatgggtctcccggtcgcggccggctgcgacacagcctgggattgaacccgggtctgtagtgacgactcaagcgccttagaccactgcgccactcgggaggcccgctaaggagtatttctgtctgtaataaaaccccttTGTTGGCGGGGGAAACAACAAATTCTGAGTGGGTGGGACTGGCtctcaagtgggtgggcctatggctTCCTAAGCCCACCCATGGCAGCGCTCCtgcccagtaatgtgaaatcTGTAGACGAGGGTCTAaccaatttatttcaattgacacatttccttatatgaactgtaagtaatttttgaaattgttgcaatttgcgtttatatttttgttcagtatagttgctGTGCATGGATGGGTTCTGTTTTGTATGCAGATTTGGGTATTTATGTAATGTATTAGGGTGTTTAAGACATTGGGcttgtttttaattatttttcaaatgttttatatgTGCATTCAGTCTGATCTGACTGTATGAATGTTCCATTTTATTTCTAGATGGAAACTAGACATTTTTAAAAGAAATCGATGGGATGACCACTAATCTCTTTTTTTTATATCAATATGGTGTTACAATAAACTGTATACTTCTACATCTTTACCAAGTTTTTATTTACAACTGAATTTTATTACGTCTTAATAAACTACGCTTCCAAATGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU398498 lncRNA upstream 17789 40777364 ~ 40778213 (+) True G351963
TU398495 lncRNA upstream 31962 40758495 ~ 40764040 (+) True G351960
TU398473 lncRNA upstream 59460 40736237 ~ 40736542 (+) True G351940
TU398450 lncRNA upstream 63341 40731750 ~ 40732661 (+) True si:ch211-63o20.7
TU398196 lncRNA upstream 79943 40715656 ~ 40716059 (+) True G351816
TU398548 lncRNA downstream 9463 40877657 ~ 40878233 (+) True G352002
TU398553 lncRNA downstream 27934 40896128 ~ 40897440 (+) True G352007
TU398518 lncRNA downstream 67933 40936127 ~ 40941155 (+) True G351974
TU398697 lncRNA downstream 88699 40956893 ~ 40957205 (+) True G352117
TU398712 lncRNA downstream 107525 40975719 ~ 40976528 (+) True G352130
XM_036976318.1 mRNA upstream 63651 40721526 ~ 40732351 (+) False si:ch211-63o20.7
XM_036976319.1 mRNA upstream 63658 40721526 ~ 40732344 (+) False si:ch211-63o20.7
XM_036976317.1 mRNA upstream 63708 40721526 ~ 40732294 (+) False si:ch211-63o20.7
XM_021601088.2 mRNA upstream 81978 40708662 ~ 40714024 (+) False LOC110522626
XM_036976327.1 mRNA downstream 146 40868340 ~ 40887504 (+) False hmbox1b
XM_036976326.1 mRNA downstream 146 40868340 ~ 40887505 (+) True hmbox1b
XM_036976333.1 mRNA downstream 50046 40918240 ~ 40945004 (+) False abcd4
XM_036976334.1 mRNA downstream 50046 40918240 ~ 40945004 (+) False abcd4
XM_036976335.1 mRNA downstream 50046 40918240 ~ 40945004 (+) False abcd4
TU397710 other upstream 659229 40134687 ~ 40136773 (+) False G351441
TU397708 other upstream 659229 40134966 ~ 40136773 (+) True G351441
TU396863 other upstream 1406528 39388589 ~ 39389474 (+) True G350665
TU396861 other upstream 1406567 39388141 ~ 39389435 (+) False G350665
TU396290 other upstream 1891228 38903730 ~ 38904774 (+) True G350211
TU398718 other downstream 121965 40990159 ~ 40990505 (+) True G352136
TU398979 other downstream 342053 41210247 ~ 41210998 (+) True G352340
TU398983 other downstream 342919 41211113 ~ 41213949 (+) True G352341
TU399156 other downstream 498007 41366201 ~ 41366607 (+) True G352477
TU399921 other downstream 1256482 42124676 ~ 42125759 (+) True G353125

Expression Profile