RNA id: XM_036976333.1


Basic Information

Item Value
RNA id XM_036976333.1
length 2691
RNA type mRNA
GC content 0.47
exon number 19
gene id abcd4
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 40918240 ~ 40945004 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTCATGTGAGGAAGCCCCAGCGGCCGttagtgggagaagatggagcgagatggatttTATCCGATATTTTGCtaattttctcatcgatgaaacacTTGATCTCAATACAATTTTCTGTTATAAAAACTAGAATATTTTACGAACAGAGTGGACAAAGTTTTTGTAGAcattaccctttgccaaagttttttttttttaaactgcgttGTTTACAAGGTGTGAAAGGGCGAATTGCGTTATTGCACACGTGCCTTTCACatagtaggcgttccctaacggaaatatgctaAGAACTGCTCGAACgcaccaataggatctcgctatcCCGGTACTTGGCCCCGCCCACTATGATTCGATTTCTACCATCGGAAACGAGAGGCTGTGGCTTATCTTGGGTCAGTTATAAACCAACTTCACAGTGACATTTTTAGCAGCTTGCTTCCTGGttattatatatacatatatatatatatatttttttttttaaaccttttgtCGTGGTCTTACTGTGACTATCACAGGGACTAGTTGTGAAATCACTCCACTGATATCTCCAGTTAGTTTATACAAGTCAGAAAATAGCCCACTGTGATTTTCTTTGGATAATACTGTGCAGATGCCACCACTTGCAAGGGCGAGTGGCAAAGGGATGAAAAGaAGGCCCAAACTAGACTGGAGGTTTGTCCAGAGGTTCTGCAGCATCCAGAGGGTTCTCTTCCCATCATGGTCCAGTCAGAACGTACTGATGTTGGGGACATTGGTGGGAGTCACACTCACAGAACAGATGATCATTTACCAGGTGGGAGTCGTCCCCAGTCAGTTCTATGAGGCCCTGTCTGACAAGGACTATGGTGCGTTCAAGAACCTCGCAGGGTTGGCCTTCCTGCTTATACTGCTCAACTCCACATTGAAGAGTGTGGACCAGTATATCTGTAGTCTGATGTCTGTGAGTTGGAGGAAGTCTTTAACAGAGAGTCTCCACAGAGCTTACTTCCAGGGGAACGTTTACTACACACTCAACGTGCTCAGAGAGGACATTGATAACCCAGACCAGCGAATCAGTCAGGACACAGAGAGGTTATGTAAACAGATGAGCACCATGGTCAGCAGATTGATCATCTCTCCATTCACCTTGGTCTACTACACCTACCAATGTTTCTACAGCACTGGCTGGATCGGTCCTGTTAGTATCTTTGGCTACTTCATAGTCGGGACTATCACCAATAAAATCCTCATGGGGCCAATTGTGTCAACTCTGTTTGAACAGGAGAAACTGGAGGGAGACTTCAGGTTCAAGCACATGCAAATCCGGTCCAACGCAGAGTCTGCCGCTTTCTACAGAGCTGGCAAAGTGGAACACATGAGAACAGACAGGAGACTGCAGACGCTGCTGCGCTGCCAGAAGAGTCTGATGAACAAAGAACTCTGGCTGTacattgGAGTGAACACCTTTGACTACCTGGGTGGTATCCTCAGCTACATCATTATCTCCATCCCCATCTTTTCGGGTGTTTATAACAACCTCAGTCCAGGGGAGCTCAGTGCCCTCATCAGTAAGaatgCCTTTGTCTGTATCTACTTGATAAGCTGCTTCAGTCAGCTAATAGACCTGTCCACCACTCTGTCAGACGTGGCTGGATACACCCACAGGATAGGAGAGCTGAGGGAAGTAATGGATGATATCTTGAGGACACGTTGTGACTACGACCCTGCATCAGGAGATTCCTACGACTTTGACAGTGACAAGGTCCACAGTGGTCCAGTAGACACAGCCTTCATCCTGGACTGTGTGTCCTACAAGAGTCCCTTCTCTGAGCAGCTGCTGGTTGAAGAGCTGAGTATCAAGATCAGCCAGGGCTCCAATCTGCTGGTGGTGGGAAAcacagGCACTGGGAAGACCTCCCTACTGAGGGTCCTGAACCGCCTGTGGGAGGCCGACAGCGGCTATGTCCAGATGACGACGTGTTTCGGTCCCAGGGGAATCCTCTTTCTGCCTCAGAAACCCTACCTGACAGACGGAACACTCAGAGAACAGGTGATCTACCCTCTGAAGGAGATCTACCCTGTATCAGGGTCAGTGGACGATGAGAGAATCATACAGTACCTGGAACTAGCTGGAGTGTCTAGTCTCCTGAAGAGGACAGGAGGACTGGATGAGCCTGTAGACTGGAACTGgtatGATGTTCTGTCTCCAGGGGAGATGCAGAGGCTTTGCTTTGCCCGACTCTTCTACCTGCAGCCTAAATACGCAGtgttgGACGAGGCGACCAGTGCCCTGACAGAGGACGCAGAGGGGCAGATGTACCGAGGCTGTAAGCAGCTGGGAATGACCCTGGTCAGCCTGGGACACCGCAAAAGCCTGGAGAAGTACCATGACGTCTCATTGAAACTGTGTGGAGAGGGACGCTGGGAGCTGACCAAGCTTAAACAGGAGTGATGCTTGAAACAATGACTGGTCACAACCAAACCTTAACACAACCAAAATGTAAATGACCACGACCCAACCAAAGCACAACCACAATATGACTGGCCACAACCCAACCACAATGTAACTGACAATCACTTATTAACCAAAACCAGTGTTAATTTTGGCACTCTTTTACATTTAGTCTTAGTCATTTTGACTAAAATATAATTAAATCTTGgtcacatttttgtcatttaaatAATAAATTAGTCTAGTTTTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU398553 lncRNA upstream 20800 40896128 ~ 40897440 (+) True G352007
TU398548 lncRNA upstream 40007 40877657 ~ 40878233 (+) True G352002
TU398510 lncRNA upstream 50075 40864521 ~ 40868165 (+) True LOC110521111
TU398498 lncRNA upstream 140027 40777364 ~ 40778213 (+) True G351963
TU398495 lncRNA upstream 154200 40758495 ~ 40764040 (+) True G351960
TU398697 lncRNA downstream 11889 40956893 ~ 40957205 (+) True G352117
TU398712 lncRNA downstream 30715 40975719 ~ 40976528 (+) True G352130
TU398717 lncRNA downstream 43423 40988427 ~ 40988642 (+) True G352135
TU398740 lncRNA downstream 49672 40994676 ~ 40994978 (+) True G352158
TU398751 lncRNA downstream 64551 41009555 ~ 41010393 (+) False G352169
XM_036976326.1 mRNA upstream 30735 40868340 ~ 40887505 (+) True hmbox1b
XM_036976327.1 mRNA upstream 30736 40868340 ~ 40887504 (+) False hmbox1b
XM_036976321.1 mRNA upstream 50046 40778358 ~ 40868194 (+) False LOC110521111
XM_036976322.1 mRNA upstream 50046 40778358 ~ 40868194 (+) False LOC110521111
XM_036976323.1 mRNA upstream 50046 40778360 ~ 40868194 (+) False LOC110521111
XR_005051447.1 mRNA downstream 93233 41038237 ~ 41041039 (+) True LOC118964399
XM_036976342.1 mRNA downstream 126478 41071482 ~ 41085688 (+) False LOC110521114
XM_021601101.2 mRNA downstream 481876 41426880 ~ 41445268 (+) True LOC110522636
XM_036976355.1 mRNA downstream 703788 41648792 ~ 41651426 (+) True LOC110522641
XM_021601114.2 mRNA downstream 719598 41664602 ~ 41675680 (+) True LOC110522642
TU397710 other upstream 781467 40134687 ~ 40136773 (+) False G351441
TU397708 other upstream 781467 40134966 ~ 40136773 (+) True G351441
TU396863 other upstream 1528766 39388589 ~ 39389474 (+) True G350665
TU396861 other upstream 1528805 39388141 ~ 39389435 (+) False G350665
TU396290 other upstream 2013466 38903730 ~ 38904774 (+) True G350211
TU398718 other downstream 45155 40990159 ~ 40990505 (+) True G352136
TU398979 other downstream 265243 41210247 ~ 41210998 (+) True G352340
TU398983 other downstream 266109 41211113 ~ 41213949 (+) True G352341
TU399156 other downstream 421197 41366201 ~ 41366607 (+) True G352477
TU399921 other downstream 1179672 42124676 ~ 42125759 (+) True G353125

Expression Profile