RNA id: XR_005051547.1


Basic Information

Item Value
RNA id XR_005051547.1
length 1337
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC118964483
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 42319401 ~ 42328637 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggagacattctggtagaggagaggagaggagacattctggtagaggagaggagaggagacattctggtagaggagagaagaggagacattcTGGTAGAGGAGGTCTGTGGATTCAATGGAACTGTTACCGTTCAGCTTTTCAGGTAAATATTTTTTTGAGTTTAACAAATATTTCTCTGAAAGTTCTGCTTGTAGTTTATAAAAAGTTAAAGGCTCTACTGAGTGAAGTAAAATGTTTCTGATAGTTGCTTTAAGTCATTTTTTTTAACAATCTATGTAAAAACCTAAAGTACTTATAATGAATAGGTTTGAGTGAGTCACATGTGCTGTGCCCTCTCATCATCAAATTGGCTTGATTTGCTGTGCCATTTGAGCTGAGAGTGGGATCGGGGGACGGGACGAGACGGGGAGGGTACGGGGGGGCCGGCAGCAGGTGTTGGAACAGTTGTTAGGTGATGTCTCTCTATCTGTTGTTTACGACGTTGGGACAACGGCACTCTGGAGCAGTAGCAGGACATGACGCCTCTGTCAGTGGAGCCTGCTCTACTCCGTTTAGAAAAGTGGAGTGACTGTCTGAGTGGCCTTCTTCCTAAGACCAGCCTGTGTGCGCCGGTActttgacacacaaacacacacactacgagtggagaagaggaggattcTGGGATGTGGACGAGACAGTGAATCGCAGAAAAAGGTAAGGGAAAAGGGGACGTTTCTgaactcagacatcattacaattCCAACAGCCGCTTTCTCTACTATCTTTCTCCCtacttttccctctctcctcctcctcctcctcctccttttccccactcccacccatctcttctcttttcccttctctttcactccttccctctctttctctcgttttcCCTCTCGTCCTAAAGCAGCACGCCTTGCTGTGGCTGGTCAAACGGAACCAAGTCAGGTGTTTCAGTGAGGTTTGGTCCCCTTCAACCAGCTACTGCGTCGTGAACTCagtcagcagacagacagacacccgcAGCGGGAACGAAAGACAGTGTAGCCCTACTGCTGCATGTTTTTGTGTCTCCATAAATCAGATGttaatgtgtttttgtgtctccaTAAATCAGTTGttaatgtgtttttgtgtctccaTAAATCAGGTGTcattgtgtttttgtgtctccaTAAATCAGGTGTTAATGTGTTTTGAGTCTCCATAAATCAGGTGttaatgtgtttttgtgtctccaTAAATCAGGTGTcattgtgtttttgtgtctccataaatcaggtgttaatgtgtttttgtgtctccaTAAATCAGGTGTcattgtgtttttgtgtctccaTAAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU400068 lncRNA upstream 29672 42288775 ~ 42289729 (+) True G353257
TU400066 lncRNA upstream 33870 42284853 ~ 42285531 (+) True G353255
TU400057 lncRNA upstream 69723 42248574 ~ 42249678 (+) True G353247
TU400056 lncRNA upstream 71581 42247531 ~ 42247820 (+) True G353246
TU400053 lncRNA upstream 102975 42215591 ~ 42216426 (+) True G353244
TU400115 lncRNA downstream 6655 42333636 ~ 42335366 (+) True G353284
TU400132 lncRNA downstream 40774 42367755 ~ 42370650 (+) True G353293
TU400151 lncRNA downstream 53185 42380166 ~ 42380846 (+) True G353312
TU400156 lncRNA downstream 60985 42387966 ~ 42389462 (+) True G353315
TU400159 lncRNA downstream 76342 42403323 ~ 42404961 (+) True G353318
XM_036976367.1 mRNA upstream 384821 41884265 ~ 41934580 (+) True LOC110522644
XM_021601116.2 mRNA upstream 637455 41676261 ~ 41681946 (+) True LOC110522643
XM_021601114.2 mRNA upstream 643721 41664602 ~ 41675680 (+) True LOC110522642
XM_036976355.1 mRNA upstream 667975 41648792 ~ 41651426 (+) True LOC110522641
XM_021601101.2 mRNA upstream 874133 41426880 ~ 41445268 (+) True LOC110522636
XM_036976381.1 mRNA downstream 2761 42329742 ~ 42364354 (+) False eif2b4
XM_036976380.1 mRNA downstream 2955 42329936 ~ 42364354 (+) True eif2b4
XM_036976382.1 mRNA downstream 43839 42370820 ~ 42433129 (+) True LOC110522651
XM_021601134.2 mRNA downstream 133377 42460358 ~ 42514461 (+) False si:ch211-278j3.3
XM_021601127.2 mRNA downstream 133380 42460361 ~ 42514461 (+) False si:ch211-278j3.3
TU399921 other upstream 193642 42124676 ~ 42125759 (+) True G353125
TU399156 other upstream 952794 41366201 ~ 41366607 (+) True G352477
TU398983 other upstream 1105452 41211113 ~ 41213949 (+) True G352341
TU398979 other upstream 1108403 41210247 ~ 41210998 (+) True G352340
TU398718 other upstream 1328896 40990159 ~ 40990505 (+) True G352136
TU400099 other downstream 899 42327880 ~ 42328637 (+) True LOC118964483
TU400176 other downstream 115774 42442755 ~ 42443381 (+) True G353328
TU400187 other downstream 124051 42451032 ~ 42451409 (+) True G353339
TU400784 other downstream 583905 42910886 ~ 42912177 (+) False G353820
TU400954 other downstream 926922 43253903 ~ 43279017 (+) True sh3bgrl2

Expression Profile