RNA id: TU400095


Basic Information

Item Value
RNA id TU400095
length 1222
RNA type TUCP
GC content 0.44
exon number 4
gene id LOC118964483
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 42319401 ~ 42328637 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGAATAGGTTTGAGTGAGTCACATGTGCTGTGCCCTCTCATCATCAAATTGGCTTGATTTGCTGTGCCATTTGAGCTGAGAGTGGGATCGGGGGACGGGACGAGACGGGGAGGGTACGGGGGGGCCGGCAGCAGGTGTTGGAACAGTTGTTAGGTGATGTCTCTCTATCTGTTGTTTACGACGTTGGGACAACGGCACTCTGGAGCAGTAGCAGGACATGACGCCTCTGTCAGGTGAGGAGATCAGAGGAGAGGAATGTAGGAGAGGAGTGTtctctaggagaggagaggggtgttctGGAGGAAAACCAGTGTTTAATCTGGGGGCCTGAAGGCATGCTTCTGTTACCCGAGGCTGAGGTGTCACAAGAAAAGTGGAGTGACTGTCTGAGTGGCCTTCTTCCTAAGACCAGCCTGTGTGCGCCGGTActttgacacacaaacacacacactacgagtggagaagaggaggattcTGGGATGTGGACGAGACAGTGAATCGCAGAAAAAGCAGCACGCCTTGCTGTGGCTGGTCAAACGGAACCAAGTCAGGTGTTTCAGTGAGGTTTGGTCCCCTTCAACCAGCTACTGCGTCGTGAACTCagtcagcagacagacagacacccgcAGCGGGAACGAAAGACAGTGTAGCCCTACTGCTGCATGTTTTTGTGTCTCCATAAATCAGATGttaatgtgtttttgtgtctccaTAAATCAGTTGttaatgtgtttttgtgtctccaTAAATCAGGTGTcattgtgtttttgtgtctccaTAAATCAGGTGTTAATGTGTTTTGTGTCTCCATAAATCAGGTGttaatgtgtttttgtgtctccaTAAATCAGGTGTcattgtgtttttgtgtctccataaatcaggtgttaatgtgtttttgtgtctccaTAAATCAGGTGTcattgtgtttttgtgtctccataaatcaggtgttaatgtgtttttgtgtctccataaatcaggtgttaatgtgtttttgtgtctccataaatcaggtgttaatgtgtttctgtgtctccataaatcaggtgttaatgtgtttttgtgtctccataaatcaggtgttaatgtgtttttgtgtctccaTAAATCAGGTGTAAAATGGACAACATTTTGTACACTATGGATTCCCTTTTCATACTGTATGTTTCGGTCTTGTTTATTGTTGTGCTTGAAAAATAAAGAATTAAAAGATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU400068 lncRNA upstream 29971 42288775 ~ 42289729 (+) True G353257
TU400066 lncRNA upstream 34169 42284853 ~ 42285531 (+) True G353255
TU400057 lncRNA upstream 70022 42248574 ~ 42249678 (+) True G353247
TU400056 lncRNA upstream 71880 42247531 ~ 42247820 (+) True G353246
TU400053 lncRNA upstream 103274 42215591 ~ 42216426 (+) True G353244
TU400115 lncRNA downstream 4999 42333636 ~ 42335366 (+) True G353284
TU400132 lncRNA downstream 39118 42367755 ~ 42370650 (+) True G353293
TU400151 lncRNA downstream 51529 42380166 ~ 42380846 (+) True G353312
TU400156 lncRNA downstream 59329 42387966 ~ 42389462 (+) True G353315
TU400159 lncRNA downstream 74686 42403323 ~ 42404961 (+) True G353318
XM_036976367.1 mRNA upstream 385120 41884265 ~ 41934580 (+) True LOC110522644
XM_021601116.2 mRNA upstream 637754 41676261 ~ 41681946 (+) True LOC110522643
XM_021601114.2 mRNA upstream 644020 41664602 ~ 41675680 (+) True LOC110522642
XM_036976355.1 mRNA upstream 668274 41648792 ~ 41651426 (+) True LOC110522641
XM_021601101.2 mRNA upstream 874432 41426880 ~ 41445268 (+) True LOC110522636
XM_036976381.1 mRNA downstream 1105 42329742 ~ 42364354 (+) False eif2b4
XM_036976380.1 mRNA downstream 1299 42329936 ~ 42364354 (+) True eif2b4
XM_036976382.1 mRNA downstream 42183 42370820 ~ 42433129 (+) True LOC110522651
XM_021601134.2 mRNA downstream 131721 42460358 ~ 42514461 (+) False si:ch211-278j3.3
XM_021601127.2 mRNA downstream 131724 42460361 ~ 42514461 (+) False si:ch211-278j3.3
TU399921 other upstream 193941 42124676 ~ 42125759 (+) True G353125
TU399156 other upstream 953093 41366201 ~ 41366607 (+) True G352477
TU398983 other upstream 1105751 41211113 ~ 41213949 (+) True G352341
TU398979 other upstream 1108702 41210247 ~ 41210998 (+) True G352340
TU398718 other upstream 1329195 40990159 ~ 40990505 (+) True G352136
TU400176 other downstream 114118 42442755 ~ 42443381 (+) True G353328
TU400187 other downstream 122395 42451032 ~ 42451409 (+) True G353339
TU400784 other downstream 582249 42910886 ~ 42912177 (+) False G353820
TU400954 other downstream 925266 43253903 ~ 43279017 (+) True sh3bgrl2
TU401635 other downstream 1282325 43610962 ~ 43611562 (+) True G354462

Expression Profile