RNA id: XM_036976381.1


Basic Information

Item Value
RNA id XM_036976381.1
length 2210
RNA type mRNA
GC content 0.51
exon number 13
gene id eif2b4
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 42329742 ~ 42364354 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACATGAATACGGGGAAGACCGATGAGTGACAGtttataaaaaataatgaaaatgccGTCAACAAATACCTCATTTGTAGTTGCTTGTGAAACCCGTCAACTTCAACCGCAAGAGGGCGCTGTCTATTTCCTCCGCACTAATTCAGACGTGTATTTCCTGCTGAAACTATCGGAAACATGGCAGACTGTGGAGAACCGGATGGCCCTGGCAACAAAGATGATATCGCACGCTCAAAAAATGAAGGGAAGGAGTTGACCAAAGAGGAGAAGCAACGTCTGAGGAAACAGAAGAAACAACAGAAGAAACATAAGGAAAGGAAGAATGAAAAGGGCCCGTCAGAAACAGAGAAGGACGAGACGCCTGTCTCCCTgttgccaccaccaccacctgtggCAACACAGAAAGctCCCTCAGCATTGCCTGCCCCTGCCTCTGCACCAATACCTGTGCCTGCCTCAGCtcccttccactcctctcccGCCCCCTCCCCGGCAGACAAGCCAGCCAAGAGCAAAGCTGAGCTGAAGGCAGAGAGGAGAGCCAGGCAGGAGACTGACAGGGCCGCTAAACAGCCAGGCTCCTCGTCCTCCGGCATCAAGACCAAAGTCCCTCTCAGTGAACTAAACCCAGTGGTGAAGAGACTTCCTGAGCATGTCCAAGTGGACGACCCTGCAGTGGTGAAACGACTGGCCAAGAAGTTGGAGAGACAACAGATCCCACTGCGATCCGACTATGGCTACAAAGTCAGCCTGTTCTCTCACCTGCACCAGTATAGCCGCAAAGCCCCACTCACCCAGCTACTCAGCATTCCCTCTACAGTGATCCACCCCTCCATCGTGCGGTTGGGTCTGCAGTACTCCCAGGGTATCGTGGCGGGATCCAACGCTCGCTCTGTGGCCCTGCTCCATGCCTTCAAACAGGTGATCAGGGACTACACTACTCCACCCAATGAAGAGCTGTCCAGGGATCTGGTCAACAAACTGAAGCCCTATATCAGCTTTCTCAATCAATGTCGACCTCTGTCAGCGAGCATGGGCAACGCAATCAAGTACATCAAGAAAGAAATCTCCAATATTCCAAGTCAATGCAAAGAGGAGGAGGCAAAGACCAAACTGCTGAAGTGTATAGACCGGTACATAGAGGAGAAGATAGTTCTGGCAGCCAAGGCCATCTCTAAATACGCTATAGAGAAGATCAGTGATGGAGATGTCATTCTAGTTTATGGATGCTCGTCCCTGGTGAACCACATCCTGTGCGAGGCGTTTGAGAAGAGCAGGAAGTTCCGCGTTATTGTGGTGGACAGCCGGCCTCGTCTGGAGGGAAGGGAGGCTCTGAGACGTCTCGTACAGAGAGGCATCAGCTGCACCTACGTCCTCATCTCTGCGCTCTCATACATACTACCTGAGGTGTCGAAGGTGTTCCTGGGTGCCCATGCTCTGCTGGCTAATGGCTATGTGATGTCTCGTGTGGGCACATCTCAGATAGCTCTGGTGGCCAGGACCTTCAACGTGCCAGTTCTGGTCTGCTGTGAAACATACAAGTTCTGTGAGAGGGTGCAGACTGACTCCTTTGTCTCCAATGAGCTCGATGACCCCGATGACCTGATGGTGACCCGGAAGGGGAAGACCCAGCTGGAGAACTGGCAGGACGTCAGCTCCCTGGGTCTGCTGAACCTGGTCTACGACGTCACACCACCAGACTTTGTGGACCTGGTCATCACAGACCTGGGCATGATCCCCTGCACCTCAGTTCCTGTTGTTCTCAGGGTTAAAAACCTGGACCAGTAACAGGTGGAAGGGGAATGACGCAGGGGTCTGGCGTAGAGTCGCAGACTGATGATGCATCTGACTTGATGTGGTGTTCTATAAGAAGCACTTGTGTTTGAGAGTTGTAAGCTATGGGCACCTTATCCTCCTATATAGTGTAGGGTATTAGGTCATAGGATTCCAAATGGGGGTGTACACTTATGTTCCGACGACCATTCTAGAATGCATGGACCTAccaaatacatttgtttttaatTGTTAGTAGCGTGCTAGTGTTGATATTGGCCTGGGTCTTTAGACTCTCACTTTGCTCAGCCTTTCTACATGCTAGGCTATATCCACTGTTAACAGCTGGCCCCAAGAAAGACTACAGAAGTGTTCTACTCTGAGCAGGCATTCACACCTGTTTGGCATGTAATAAATGGCACATTATTTATTAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU400068 lncRNA upstream 40013 42288775 ~ 42289729 (+) True G353257
TU400066 lncRNA upstream 44211 42284853 ~ 42285531 (+) True G353255
TU400057 lncRNA upstream 80064 42248574 ~ 42249678 (+) True G353247
TU400056 lncRNA upstream 81922 42247531 ~ 42247820 (+) True G353246
TU400053 lncRNA upstream 113316 42215591 ~ 42216426 (+) True G353244
TU400132 lncRNA downstream 3401 42367755 ~ 42370650 (+) True G353293
TU400151 lncRNA downstream 15812 42380166 ~ 42380846 (+) True G353312
TU400156 lncRNA downstream 23612 42387966 ~ 42389462 (+) True G353315
TU400159 lncRNA downstream 38969 42403323 ~ 42404961 (+) True G353318
TU400177 lncRNA downstream 58401 42422755 ~ 42425412 (+) True G353329
XR_005051546.1 mRNA upstream 2761 42319401 ~ 42326981 (+) False LOC118964483
XR_005051547.1 mRNA upstream 2761 42319401 ~ 42326981 (+) False LOC118964483
XR_005051548.1 mRNA upstream 2761 42319401 ~ 42326981 (+) False LOC118964483
XR_005051549.1 mRNA upstream 2761 42319401 ~ 42326981 (+) False LOC118964483
XR_005051554.1 mRNA upstream 2761 42319401 ~ 42326981 (+) False LOC118964483
XM_036976382.1 mRNA downstream 6466 42370820 ~ 42433129 (+) True LOC110522651
XM_021601134.2 mRNA downstream 96004 42460358 ~ 42514461 (+) False si:ch211-278j3.3
XM_021601127.2 mRNA downstream 96007 42460361 ~ 42514461 (+) False si:ch211-278j3.3
XM_021601131.2 mRNA downstream 96007 42460361 ~ 42514461 (+) False si:ch211-278j3.3
XM_021601133.2 mRNA downstream 96007 42460361 ~ 42514461 (+) False si:ch211-278j3.3
TU400095 other upstream 1105 42319700 ~ 42328637 (+) False LOC118964483
TU400099 other upstream 1105 42327880 ~ 42328637 (+) True LOC118964483
TU399921 other upstream 203983 42124676 ~ 42125759 (+) True G353125
TU399156 other upstream 963135 41366201 ~ 41366607 (+) True G352477
TU398983 other upstream 1115793 41211113 ~ 41213949 (+) True G352341
TU400176 other downstream 78401 42442755 ~ 42443381 (+) True G353328
TU400187 other downstream 86678 42451032 ~ 42451409 (+) True G353339
TU400784 other downstream 546532 42910886 ~ 42912177 (+) False G353820
TU400954 other downstream 889549 43253903 ~ 43279017 (+) True sh3bgrl2
TU401635 other downstream 1246608 43610962 ~ 43611562 (+) True G354462

Expression Profile