RNA id: XM_021601133.2


Basic Information

Item Value
RNA id XM_021601133.2
length 3816
RNA type mRNA
GC content 0.53
exon number 10
gene id si:ch211-278j3.3
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 42460358 ~ 42514461 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGAAGCGTTGTAGAACGCCTCTGAATAACGGGGCGTGGTTTTGGCTGAACTGCGTTGGGAAAAAGAAGGCGCATCTCGCGTCACCTGTAGAAATGTACCATCTACATTTCCTGGTTGTAAGCAAACCACAATATCCAGAATGAACAGCGATTTCAAGACGTAGTACCGCCAGTCGATTGGAACCACGTAAGAATAACAAATTCAGCCTCGACCACGCACACAAATTGGGCGAGGGGCCGCTCGTTCCCCTTGGTATAGAGAAGGATGAATGCCACTCTGTTCCAGACTAACTGAGAACGAGGGAgcaacagaggaagagaaggaagaggaagaggtggaaagaggagaggaacaagTGAAGAAGAAGATTTTGAGATTCGTTCTCTCGACAGGGATCACCTCCTCTTCACATCCGGACAATTATTTATCTCTGttagtctcgctctctctctctctctctctctctctcttttcctccatcGTCGACACTGCAGTGGCGCTACCTCTCCTAGACTTTGAGCCGTGAAGgggctctaacacacacacacacacacacacacacacgtttggtcTGTGTCCTGTTGATCTGCTAATGCTGGTTAgccctggctgcctgcctgctcGCTCCATCCCAATCTCCAGATCATGAAGAGGCCCAAGCAACAGACTCATCCCCTCAGCTTCCTCTCCTTCTTCAGCCGGAAGCCTAAATCCGATCCCAGGCTTGAGAGGCCTGCTGGGGCCCACAACAAGGAGGAGGTCTCCATCACTCTCACACCCAGCGAACATGCAGACCAGGACCAGAACATCACAGCCGAAGAGGGCGGGATCGAGCAAGGCGACTTCGAGGCGGCATCGTCAGGGGTGACGGGTGACGACCCTGGCGCTGCGGTGGAGGTGGAATGCTGCGGTGGCGGAGCCAACAGCTCTTCCACAGGtgtcctatccctctcctcttccaGCCAGGACCAGCTATTGGATGATCACCACTTGGAGGAGTGTCCTTTATGCCTCCTCAGCCAACCACGATGCCGGTTCCCTCgcctctcttcctgttcccaCCGGGCCTGCTATGACTGCCTGAGACAGTACCTGAAGATTGAAATCTCAGAGAGCAGGGTGGGCATCGCCTGTCCGCAGTGCCCCGAGGCGTTTGCGCCGCAAGATGTGCGGACCATCCTGGATGACCTGACGCTGCTGGAGAGATTCGAAGAGTACCAGCTGAGACGGTTTCTGGCAGCCGACCCGGACACGCGCTGGTGTCCAGCACCCGACTGCAGctTTGCAGTGATAGCGTATGGCTGTGCTGAGTGTCCTAAGCTAAGCTGCGGGCGTGAGGGCTGCGACACAGAGTTCTGCTACCACTGTCGGCAGCTGTGGCACCCCGACCAGACGTGTGACCAGGCTCGACGCCAGCGAGCACGCCACACTTCCGGGGGAAATGATGCCTCCACATTATACGTCTTCAACGAGGAGCCTGGAGGAGAGTCGGAGGAGATCAAGGCGTGTCCTCGTTGTGGGGCCTACATCATGAAGACCAACGATGGCAGCTGCAACCGGATGAACTGTACCGTGTGCGCCTGTCAGTTCTGCTGGCTGTGTATGCAAGAGATCACCGACGTGCACTACCTCAGTCCCTCAGGTTGTACGTTCTGGGGGAAGAAGCCGTGGTCTCAGACCCGGAAGGTGCTGTGGCAGGTGGGCATGCTGCTCGGCGCCCCAGTAATCATCTCTCTCATCGCTGGCATCGCCATCCCCGTCATCATAGTGGGCATTCCCATCTACATGGGCCGCAAGGTCCACGGACGCTGTAAGAAGAACAATATCTCAGGTAGTAAACATTATCTAACGGTGGCCAGCGGCGTCATGATGTCCGTGTTCGTGTCGCCCGTCATAGCTGCTGTCACTGTGGGGGTGGGCGTCCCGTTGATGTTGACGTATGTCTATGGGGTCGTCCCCATGTCGCTCTGTCGGAATGGATGGTGCCGGCCGCAGAACGACCCCCCAGAAACACATAAGATACAACTGGAAGACCTAGCCAGCTATCTTCTATTCTCTCATGTAGTCAGCGACCACTGGCCGGGACCGGGGCCAAGAGGCCAGACCAACCCCGCCCTCAGCGACACCAGCGTCCAGGAAGTCCTACAAGATGTTAGGGTCAGCGTACAGGAAGTTGGCCTGCTCCCCAGCACCAGCAGTGCTGCCACGCCCCCGGAACCAGATGCATGCGCAGGATTGGACAAGCATCAGATGCGTCATGTTTATATGCAGCAGGACAGCCAATCAGACTGCGAAGGTGCTGGGATGCTGGATAAGACACAGACATTCTCCTTGCGGGAGGGAACAAACATTGAGGTGCGTGTAGAGATCGAGGCCCATCCACGAGGTGCACGTCAGTCCAGTCTCAGTAGCATCCTGTCCAGTCGCAGCCTATCAGCTGAGTCCCTGGGTCGAGCACACACAGTAGGCCGCGCCCACTCGCAAGATCACCTGGGCCACGCCCACTCCCAGGAACATCTGTATGCCTCTGAACATGAAGAAGAGAGTGGAGAAAAGGaaagtggaggaagagagggagaatgcAGGGACCACCTGCATGTTTTTGAGACGGACAACGTCTGAGCTCCGCCTACTATTTAGGCCACATCCCGCTTCCACTACAGGCTCCTACCACCAACTGTCTTCCTGCTCCACCGTCTAAGAGtcggggaaatggagagagagagaaaaggagagcgagagcgacagtgaggagggagagatggaaaaagTGTGTTTGTGGAAAATGGACTAAATAAACAGGGCCGCTTGCCAACACGGATGCAGCAAAACGAACCAGAAATGACTGAAAGCATGTTGATCGACTAGTTTGGTGGGTGTTAGCCTCACTTTACTGTGTCCTTTCAGAAGagactgccccccccccaccctcccccttCCAATCTAACACTGGTCTATTTAAATTAAAATGATTACCAAGCCCCTTCTCTACCTACACCCGCGTACTTATACTGATCGTttgtatcaagcatctcagagttGGAGTGCTGATCTCGGATCAGTTTAGCCCTTTTTCGATCACAATGAACATTATTATTATAGACAGAGaatacctgatcctagatcagcactcctacacaGAGATACGTACAACGCCTAATGTCCCCCCCTTTCCATCTAAGATACATTTTAAGAGATCTAAAAGCATGTTTTGTTCTGTAGGGGTTAGCCACATGTAACATGCTGCTTCAACTCTCTTCCTGTCCGTCCCGTGTTGATGATGACATGCCATGGAACGTTGAGAGGCTACTGTGTAAAAGGGTCTAAtgaaggggttggggggggggggggggtgggggagttTCAGCATTGTCAGATACCGTGTAAACCTTACTTTGTGCAACGCGTTTTAACAGAGGAGATATGCTGGTCTAACTTTAAGGGACTTGTTGAAATGCAGTCGCCCTCAACTATGACTCGTTGGGGATCTCAGTGAATTTCATAGTGGACCACTTTGACCAAACTGGTTATCAAGCTGATGTCCCCTTGTATCACAACCTTTCATTGAGGaggttgggggggagggggggtgctgctgctgctgctgctatctgTTTTGGTCAAGGCATACATTATTTCTCTGCTGTGAATCTAAGCAATATTCAGGGACCAGGCTCTGTGAAGTTCAGAGCTAGACATATCCTACCGACTCTggctgtctgcatcccaaatggcaccctattccctaatatagtgcactactttgaaccagatccctatgggccctggtcaaatgacaccctattccctaatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU400134 lncRNA upstream 2556 42455695 ~ 42457805 (+) True G353295
TU400191 lncRNA upstream 4818 42454941 ~ 42455543 (+) True G353343
TU400188 lncRNA upstream 8296 42451815 ~ 42452065 (+) True G353340
TU400185 lncRNA upstream 12266 42447862 ~ 42448095 (+) True G353337
TU400184 lncRNA upstream 14173 42445963 ~ 42446188 (+) True G353336
TU400206 lncRNA downstream 6657 42521118 ~ 42521317 (+) True G353355
TU400232 lncRNA downstream 57214 42571675 ~ 42572122 (+) True G353375
TU400250 lncRNA downstream 71207 42585668 ~ 42653695 (+) False G353383
TU400266 lncRNA downstream 117822 42632283 ~ 42633512 (+) True G353398
TU400268 lncRNA downstream 120171 42634632 ~ 42642233 (+) True G353399
XM_036976382.1 mRNA upstream 27232 42370820 ~ 42433129 (+) True LOC110522651
XM_036976381.1 mRNA upstream 96007 42329742 ~ 42364354 (+) False eif2b4
XM_036976380.1 mRNA upstream 96007 42329936 ~ 42364354 (+) True eif2b4
XR_005051553.1 mRNA upstream 133380 42319932 ~ 42326981 (+) False LOC118964483
XM_036976389.1 mRNA downstream 7325 42521786 ~ 42630516 (+) True si:dkey-71h2.2
XM_036976397.1 mRNA downstream 739431 43253892 ~ 43278315 (+) False sh3bgrl2
XM_036976398.1 mRNA downstream 739431 43253892 ~ 43278315 (+) False sh3bgrl2
XM_036976399.1 mRNA downstream 772191 43286652 ~ 43291268 (+) True rps12
XR_005051570.1 mRNA downstream 772721 43287182 ~ 43287259 (+) True LOC118964509
TU400187 other upstream 8952 42451032 ~ 42451409 (+) True G353339
TU400176 other upstream 16980 42442755 ~ 42443381 (+) True G353328
TU400095 other upstream 131724 42319700 ~ 42328637 (+) False LOC118964483
TU400099 other upstream 131724 42327880 ~ 42328637 (+) True LOC118964483
TU399921 other upstream 334602 42124676 ~ 42125759 (+) True G353125
TU400784 other downstream 396425 42910886 ~ 42912177 (+) False G353820
TU400954 other downstream 739442 43253903 ~ 43279017 (+) True sh3bgrl2
TU401635 other downstream 1096501 43610962 ~ 43611562 (+) True G354462
TU401825 other downstream 1475662 43990123 ~ 43990639 (+) True G354630
TU401884 other downstream 1594618 44109079 ~ 44110024 (+) True myb

Expression Profile