RNA id: XM_036976425.1


Basic Information

Item Value
RNA id XM_036976425.1
length 7502
RNA type mRNA
GC content 0.55
exon number 54
gene id nbas
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 44401316 ~ 44700404 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCATCCTGTATTCCGTAGTTTGTGACAGAGTTTGGATCAACTATCCACGTAAACATGGCTGATGATAGCAACATTGACGTGGAAGATGAGAACATTTTGTATGATTTACTGATAAATACGGAATGGCCACCCGAGACCGACACTCAGTTGCGAGGCAACAAGGAGCACAGTTCATCTGTTATTGCCAAGGCTGTGACAGGACCTTTTAGGTTCATCCTGCATTACCTGTGGTACAGTCCCTCTAGCTCCTCTCTACCTCCCGGCCTGGTCCGACTGGCCAACAAGCAGATCAACTGGCAACTGGTGCTAGCAagtaatGGGAAGTTGCTGGCTGTGGTTCAGGACCAGTGTGTGGAGATCAGGTCTGCGAGGGATGACTTTGGCTCTGTCATTGGGAAGTGTCAGGtgccgAAGGACCCCAGTCCCCAGTGGCGGAGGGTGGTGTGGTCCCATGACTGTGCCCTGCTGGCGTACGCTGACAGTACCGGTACCGTGCGCGTCTTCGACCTCATGGGCAGCGAACTGTTCGTCATCCCCCCGATGGCCAGTTTCCCGGGTGATTTCAGCTACGCCGCAGCAGGCCTGATCTTCCTGGAGTACACGGCCAGTGCTCAGTGGTCGGCTGAGCTGCTCGTCATCACATACGGGGGCGGGCTCAAGAGCTACCTCGTCAGTGTCGGGACCAATCAGAGCTTCCAAGAGAACCACAGCTTCAGTTTCTCTACCCACTACTCTCACGGCATCACCACGGCAATATACCACCCTGGGCACCGgttgctGCTGGTGGGGGGTTGTGAGTCGGGTGTTGACGATGCGTCCAGGGCAACCCGGTGTGGCCTCACGGCCTGGAGAGCTCTGTCTGGGTCGCCCCATTACAAACAGGTCACCAGCTACGAGGACGACACCAGCACTaACCAGAAGAAAGGGTTCTTCACTGTCCCCAGCTTCAGACTCTTCTCGAGACACAACAATGAACAGGACGGTGTGTTTCGTTTGAGTCTGTCTCCTGACGGGACGCTCCTGGCCGTCATCCATTTCTCTGGACGTCTGTCTGTATGGGACCTCCCCTCTCTCAGACAGACAGTCTCCTGGGATCAACAACTAcagCCAGGGTTTGAGGAGATCAACCCAGAATGGAAGACTtcgctggagaagaggaagaagattAAAGACAAGGAGCAGTACTACTCTCTGTGTGAGGTGGCCTGGTGGTCAGACTGCGTGCTGATCTTGGCCCGGTGTTCTGGTTCTCTGACCGTGTCCTCTGTTAGAACCCTTCAGAACCTCCTGGGAAAGAGCTGTGAGTGGTTCCAGCCATCGCCACGGGTTACCGCCGCCCACGACGGGGGCTTCCTCAGTCTGGAGTGTGAAGTGCGTCTGGCACAGAAGAGAGGTCGTCTGGACAGTAACATGGGGGGTGTGGCTTcggaggatgaggagggtgagGAAGGAGACTCTGACTCTGATGATGAGTCGTCAGCCAAGGCCCGTTACTCCGGTTACGTGAAGCAGGGGCTGTACTACGTCACCGAGATGGAACGCTTCGCGCCGCCACGGAAACGTCCCCGCACCGTCGTCAAGAGTTACCGTCTGGTCAGCCTACGCTCCACCACGCCTGAAGAGCTGTACCAAAGGAAGATAGATAATGAGGAGTATGGGGAGGCCCTTTCCCTGGCCCAGGCATACGGTCTAGACTCAGACCTGGTCTACCAGAGACAGTGGAGGAAGAGCACTGTCAGCATCGCCTCCATACAGGACTACctgagtaagATCCATAAAAGATCGTGGGTGCTCCATGAGTGTGTTGAACGTGTCCCAGAGAACGTGGACGCTGCTAAGGAGCTGTTGCAGTACGGCCTGAAGGGGACAGACCTGGAGGCACTCATCGCTATCGGCAACAGAGAGGACGGTGGCAGGTTTATCCTATCAGGTGACCTTGATGTTGATGACGCTCCGTACGAGGACTTCCTGTCTGCAGAAAAAGAGATGgagttaaagagagagaaggagagccgGAAGAGACAGGAGCTCCTGGCCAGGGTCGACTTCAGCAGGTTGACCCTGGAGCAGAAGGAGTTGTGTCGGAGCAGACTGAAGCTGCTGTGCTACCTGGACCGCCTGGCCACCTACGAGgATATATTAGGTGGTCCCGATGCTgcagaacagagatatgactcgGAGTTCTTTAAGAAGTTCCGGAACCAGAATATCATTCTGTCAGCCAGAACCTACGCCAGGGAGAGTAATGTCCAGGCACTGGACATCCTGTTCACCTATCATGGAGCAGAGCTTCTCCAACACCGATTGGCTATCCTCTTCAACTTCCCAGAAACCACCTCGCCACACGAGTACACCATCCTGCTGCCGGAGGCCTGtgTGGATGAGAGAGGAGATTTGGGGGTGATCCCCTGGGATgaacagagacacagggagatgGACTGGTGTGAAGAGGACCAGTGTAGGACGGTATTGGATCAAAACCTCCAGGACCATGCCCACTTCCTGTATGAGGACGCTCCTGATTGGCTGCGGTTCCGTACGGCCACGCCCCCCATGGacctgttgactgactggtaccTGAGCCGTGCCCAGGACATCGACTCCTGTTCTAGACAGGTGGACTGTGCACTGTCATTGGTGCGTCTCGGGAAGGAGCGGGATATCCCGGGGTTGGAGCGGCTGTGTGATGACCTGGTAACCATGGAGACGTTGGTGTACGAGACGGCGTGCGAGCTCAGCCTGACATTAAGAGACTTGCAGCAGCTCGGTGACATCGACAAGCTCCGCCTCCTCATGAAGAATTCCAGTGCAGAGCGCTATGTTAAAGATGTGTTCCAGTGGATGGTTCCTTTCCTGCATCGCTGTGAGAAGCAGAACGGGGGCGCTAGCGAGGCCCTGCTGAGAGAATATCTGGTGACCCTCTCTCGGCAAGACCTGTCTCTACCCCTGGCTGTCTTCCAACACTCCAGACCTGAcAGCCAGCAGAAGGTGCTTGGGGACCCAGATCAGCTGATGACTGTGGCGTTGGAGTGTATCTACAGCTGTGAGAGAGACGATCAGCTGTCCCTCTGCTACGACATCCTGGAGTGTCTCCCTCAGAGAGGCTAcggGCCGGAGACGAACATCACCGCATCTCTCCACGATCAGGTGGACAAACTGGAAAAAcacctcagtGTGGTAGAGGTGTTGGAGAAGCATGGTCTCCAGAAGCCTGTTTCCTATGTGAGGAGCAGCCAGACCAGTACAGAGGAGGCTCATGCTCTCATGGTCAAACTCTGCAGACACACCGGGCgcagGACCCCCCCTGTCAGTGAGTCTGTGTGGAGAGGTGTTCTACAGGACCTGCTGGACATGCAACACAGCGTGTACACCTGTCTCCTACCTGACACCTGTCACCAGATATTTGTGGAGTCATTGCTGTGCAGTGGCCGCCCAGAGAACGTAGTCCTGGCCGGTCAGCTGATACACTGTTCAGCGGTCAGCCATGATGTGGTTCCGGTCAGCGTGTCATTCCGAGACCGGGGTCGCGGCGGGTTGAGCGCTAAGGTCAACTACCACACAGCCGTAGAGCTGGTTCTGGCTGCTGCCAGGGAATACTTCAACTCGTCCACCACCCTCACCGACCCTTGTATAGAACTGGCACGGGAGTGTCTGAAGCTGATCACAGACTGTCCACCTGCAGTTCAGGAGGAGATGGATATCATCAGCTCCCTCTCTGTGTTGGAGTCCTTCAATGTcaatatactaccactacaagtgcgTCTGCGTGTGGAGCGGTTGTCCATAATTGAGCAGTGTATTTCCCAGTGTTCTAAGGCCTACACACAATCAGCCCTGCTTCTGGACCTGGCCTCACTGCTCAGAGtcgcagGTGGTGATGAGTGGAGGTGTAAGGGTCAGGTGTTCTCTCTACTAGCTCAACAGGCTCTTCAGGCGCTGGACTACAAGACCTCCTACATACACTGTCAGGACCTCATGGCCTCAGGTTATGGTGATGGCTGGGAAGTGTGCAGCCTGCTTGGACAGTGTGAGGGGTACATGGACCTCAGGGCTCGCCAGGAGCTGCTGGCCTTCTCTTTGACACACTGCCCCCCCGCCAGCATCCACCCCCTCCTGGCTGCCTCTAGTGACCTACAGACACAGGTGTTGTACCAGGCAGTGAACTATCAGATGGATCCCCTTGAACCTGAATGTTTCTGGGAcgagacagtacagtccgcTGGTCCTCCCAGCTCTGTTTCACCACTGGGTGGCGCTGCAGGAGACCTACTTCATCGTACCACCAATAGAACCATAGAGGTCCTGGCCAGTACTGGCCTGACCACTAAGGCTGTTCTGACTGCCGTCAGCGACCACAGCTGGTGGAAGAACCAGCTCAACTACCTCCGACCACTGCATggTCGGAGTGGAGGCTCCAAGgctgtaggaggagaggagaacaggggtcTGGAGAGACAGGGTGTTAACCCCTTCTACCAGGGACTGTTTGATGATCCATATGTAGACCagAGTGAAGATATGTATGGGTCGTATGATGCCGTACCTCAGGAGCAGTTTGCTGAGGTTCTACTGCGGACTGGGAAGCTGGCTGAGAccaagacagagggacagacccTGTTCCCTGCCACAGAGGtattgcTGCAGCTGGCCAGTGATGCCTTTCCCAGAGACATGACCCTGTCTCTGGCCTATCTCCTGGCCCTGCCGCAGgtcCTGGATGCTAACAGGTGTTTTGAGATGCAGTCCCACTCGGCCCTGTCCCTGCAGCTAGCAGCCTACTACTATAGTCTACAGATCTACAACCACCTGGTCCCATGCCTcaaggccaacacacacacactctacaggGCCGACCCCAAGGAGCTGATCCGATTGGTCACCCAGCACGTGACGGCCcattctgattggccagcggaCGTGGAggagctgattggccagctccaGGTGTATAACGAGCGTCTGACAGACCTGACGCAGGCCCAGGTGTTGCAGGGGCTGGGACGTGGGGTCGACGTTAGACGATTCAGTTCCGACACACACTACAAGAAACAGACCATTCTGGGTCTGACTGAGACCCTGGATGACAGCGTGTGGAGAATCAGTCTGTCTCTAGCCCAGCGCTACAGCATTCCCCTCTGGGACATCTACATGACTCACCTGGAGTTCCTCTTCACTGACAGcggtctctctaCCAAGGACATCGAGGGTCGTGTGGACACCTTGGCTCTATTTGACTCTCTGAAGTCAGAACCTGAGTCTTTCCACAGTCACATGTCTAAATATGTGTTGACCTCCGTGGAAGGGACAGACCTGCCCAGGCTGTTGTATTACTATACCCTGTTGGAGGAGTGTTGTGGATCGTACTGCTCTTCTGTCATCACCCCTGACACTCACATCAAACTGCTCAAGAAGCTCCGCTCCGTCACTACTGGGCTGGACTACCGTAAGATGACCGATGAGGTGTCGGATCCCCTGGCCGCTCTGGAACCCGTTCTAACCAGTCAGAATGTCCTGTCCATCTCCAAACTGGCCAATCGGCTCCCTCGCCCAGGAGGGGGTGTGGTTTCTGCTAGCGCAGTGCACGCAACCTGGCTAAGGAAGCTGTTCTGGAGGGGAGACCCACAGGTTTTAAAGAGACCCCCCCAGACAGAGCAGGACTACCTTCACGCCTATGACACCTGCGCAAAATACTTGGACAGACTGCTTCCTGCTGATGCTGTCCACTTCCTGGATGACATAACGTTCTCTCCACTAGCAGTCAATCAGctCAGTGTGAGTGTGCGGGTGGAGGtgatgaagagggggatgaaggcTCTGCGGCAGCTCAGAGAGAAGAGTAGAAAAAGGGGCGTAGACGAGGTGGAGTCAGACAGAAGCGACACCTCCAGCTTTGACCACGCCCTCTCCCACCTGCAGCAGTCCTTGGCTCACCTGGACACGCTAGGCCACTCCTTCATCCTGTCACTCAAAGATAGCAACCAGgaacgGTTGCAGAACTACAGTCGTACCTATGATCTCTCCCGTTCTGAACGGTCCAAAGTCCAGGCCCTGGCTGTCACCATGGCGACAGACGGACAGCCACTGGAGCAAATCGGAGAGCTGCTGGGCATCGCTGTGGGCAACCTGGACCTGTCAATCAAAACCGTTCTGCAGGTGGCTGTGGAGAATGTAGTCTCTGCCCTCAGCGGAGACGAGGATGTGGTGAATGATTACCCAGAACCCCTCATGGTGTTGGAGGGCATGGTCACTGCAGTGCACAACCACGTCCAGAGCGGtgaCTCTGTGGTCAGTTCTGATGACCTGTTGGCGTGGTTACGGCCGTTCTGCAGCGATGGATCTCGTGCGGTGCGACCACGTATCGAGGTTCTGCAGATTCTGGAGAATAACTTCAGTCTTAGGGACAGTGACGTTCATCTGCTGCTACTCTACAGGACCCAAGCTGTACTGAAGGATTTACAGgtggaGATGGATGACATAGACAATGAGGAGAAAAGGTATCGTCTCTTCCTCCAGCTGCTAGGCGACAGCAGGAAGTGGGAGGAGTTTCAGCAGCTGATGCTCCTCCTCCAGGCGTGGCCACCTATGATGAAAGAGGAAGTTGCTCAGTGTGAGCGTAACCCCTGGGTCGTGTTGACCTCCAGCTTAATAGAATGCTGCAGAGGTCACGGGTCAGAGGTCAGACTGGACCTGGGTCAGGAGATCATGAACATGGTCcgctccctctacccctccaaaCACAAACTACCTGCACAGTGTATCAGACACATGTCTTCTCTGCTCCTGGATCAACCAGGCCTAAGGCTCCCAGCTCTTAAACTGATGACCGAGAGTCAAGACCCCCAGCTGTTAGAACTGGTCCTGGATCAGATCAACAACACCACCGAGGTGTGTGACTCTACCTGCGACCCAGAGCTCCTGTCTCTCCTGCTGGACGCTGGTCTCCTGGTGGGGTGTGTACCGtcccccctctaccctcctctcagCGCCCACCTGCTCTCCAGACACCGGGAGGGAGGTTGGGACGTGGAGAAGGCTGCGTCAGAGCTGCTCCAGGCTGGGTACCGAGCTCAGGCCGGCTCCCTGCTTCTGACCTACCGTGGAACTCACCCGGGCCTCAGCACGTTTACTACAGCGCTCACTGTCATTAAGAAGTGGCTCTGAGGTACTGGAGAGGAAGCCGGACAGACGCTCTTATTGACTCTAGATCGTTTAGCCGCTGTTATTGTGTTTCCTAATGTTATCTCTATTCATTACTAGAAAACAAATTGGCCCTGAAAACCCCATACACTGAGTGGCTGGGTGTTGTCGCACGCATGTGCCCCAGCTCTCTCTCACTAGCACTGTAATTGGCTAATAGGATGTTGTTGTTTCATGTTGTTAAGTGGAAGACTTGTTCTGCTGTTTTTACGATTGGCTGTCCAGTGTTCTGATACACGTGCTTTGACCTGAAATATAACACAAATAAATCATTAAAGTCCATATTAATCCAATTTAATACTAA

Function

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0009790 embryo development biological_process

KEGG:

id description
K20473 NBAS; neuroblastoma-amplified sequence

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU401961 lncRNA upstream 56661 44339280 ~ 44344882 (+) False G354728
TU402037 lncRNA downstream 693 44701097 ~ 44701789 (+) True G354789
TU402812 lncRNA downstream 5287 44705691 ~ 44706777 (+) True G355300
TU402847 lncRNA downstream 39023 44739427 ~ 44739677 (+) True G355325
TU402852 lncRNA downstream 45357 44745761 ~ 44746112 (+) True G355330
TU402877 lncRNA downstream 122499 44822903 ~ 44824235 (+) True G355353
XM_036976422.1 mRNA upstream 64565 44309473 ~ 44336978 (+) True ppp1r14c
XM_036976418.1 mRNA upstream 291275 44084616 ~ 44110268 (+) False myb
XM_036976419.1 mRNA upstream 291275 44084617 ~ 44110268 (+) False myb
XM_036976410.1 mRNA upstream 632560 43740263 ~ 43768983 (+) False slc2a12
XM_036976429.1 mRNA downstream 235270 44935674 ~ 44937203 (+) False LOC118964488
XM_021591760.1 mRNA downstream 1033238 45733642 ~ 45752953 (+) False LOC110510408
XM_036976442.1 mRNA downstream 1033238 45733642 ~ 45752953 (+) False LOC110510408
XM_036976443.1 mRNA downstream 1033238 45733642 ~ 45752953 (+) False LOC110510408
XM_036976444.1 mRNA downstream 1033238 45733642 ~ 45752953 (+) False LOC110510408
TU401884 other upstream 291519 44109079 ~ 44110024 (+) True myb
TU401825 other upstream 410904 43990123 ~ 43990639 (+) True G354630
TU401635 other upstream 789981 43610962 ~ 43611562 (+) True G354462
TU400954 other upstream 1122526 43253903 ~ 43279017 (+) True sh3bgrl2
TU400784 other upstream 1489366 42910886 ~ 42912177 (+) False G353820
TU402960 other downstream 274632 44975036 ~ 44975829 (+) True G355413
TU403052 other downstream 363209 45063613 ~ 45064026 (+) True G355488
TU403390 other downstream 919862 45620266 ~ 45624004 (+) False G355753
TU403416 other downstream 989031 45689435 ~ 45698847 (+) True G355763
TU403800 other downstream 1033265 45733669 ~ 45752940 (+) False LOC110510408

Expression Profile