RNA id: XM_021591760.1



Basic Information


Item Value
RNA id XM_021591760.1
length 1149
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110510408
representative False

Chromosome Information


Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 45733642 ~ 45752953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGATTATAGAAGGTGTTTAGTATTGATCCGGTATCTGGTGGAAGGTTACTTCTAAACTCGCGCTGTGGACCTGCAGGGTGGACTATTTGATCCTTTCTGACGGCAATAGTATCTCTGTAACATCATGCCTAAAAGGAAGTCTGCCGAAGGGGCTGGTGCCAAGGACGCCTCTAAAGTCACTAAGCAGGAGGTCGCTAAGCAAGAGGTCGCTAAGCAGGAGGTCGCTAAGCAAGAGAAACCAGCTCCTCCCAAACCGGTTGAGGTCAAGCCTAAGAAGGCTATCGCCAAGCCGGTGGACAAGGTGGACGACAAGGCCATGAAGGGAAAGAAAGGAGGCGCTAAGTTGAAGAGGGAGGATGGCCCCTCCCATAACCGACAGACTCTTACAGAGgaGACTGAGGCTGTGGGGGCGGGGTCTGACGAGGAGAAGGAATGAGGAAATTGGGGGTGTGTCTTTCTCTGACTTCTCCCAAACCGGTACCATGGAAACAAAGAAAGGATCTTTTTTTACGAGGATTTTGTAAAATGCTGAATTTTTTGGGGTCCTGTGATATTAGCGAAGATAAACCAACACCCCACGTCCACACTCCTTGCAGttctatcactctctttcttttccaatcctttcctccctctcttccattttgttgttttactcctctccctctctttctcctcaaccTTTTCTTGAAAGACAGAATGAAGtgacatgtttttaaaaaatggctGCAACTATTCTTCCTCTGGCAGTGGGAGGAGCCTCACAGGGTCACCATTATAATGTGTCTCACGTCCTTTCTAAATGATGACGTCATATCCTCTCTACTAAGATAGCTCTTTTTGATGACATCACTGTAAATCATCTCCCGGCTATGACATCAGAGACCCAGGGGTCAAACTAGGCTCCTATGGCATCACAGGTGACCTTTGACCCTGAACTGAGGTGTTGCCATGGAGAATATTTGCGGCTTTTTAAGCAGATGTAGAAAAGTTTGAGAATTGTCACTCCTGTGTTTGAAACTGGCAGAGCAGTGGCATAGCAATAACAagtggtgtttcagttctagaacgCTGTGGATTCTAGAACCTCTCTGAGTTCCACCCTGCCTGGGGGAAAACATTAttttgaaataaaagctgaaagttGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU403807 lncRNA upstream 15864 45717537 ~ 45717778 (+) True G356039
TU403806 lncRNA upstream 16601 45716821 ~ 45717041 (+) True G356038
TU403460 lncRNA upstream 24432 45705848 ~ 45709210 (+) False G355787
TU403462 lncRNA upstream 26484 45705848 ~ 45707158 (+) True G355787
TU403426 lncRNA upstream 30013 45700588 ~ 45703629 (+) True G355765
TU403855 lncRNA downstream 2694 45755647 ~ 45776116 (+) False G356069
TU403859 lncRNA downstream 2694 45755647 ~ 45792521 (+) False G356069
TU403862 lncRNA downstream 2694 45755647 ~ 45782629 (+) False G356069
TU403864 lncRNA downstream 2694 45755647 ~ 45784313 (+) False G356069
TU403869 lncRNA downstream 2694 45755647 ~ 45782629 (+) False G356069
XM_036976429.1 mRNA upstream 796439 44935674 ~ 44937203 (+) False LOC118964488
XM_036976424.1 mRNA upstream 1033238 44401316 ~ 44700404 (+) False nbas
XM_036976425.1 mRNA upstream 1033238 44401543 ~ 44700404 (+) True nbas
XM_036976422.1 mRNA upstream 1396664 44309473 ~ 44336978 (+) True ppp1r14c
XM_036976418.1 mRNA upstream 1623374 44084616 ~ 44110268 (+) False myb
XM_036976457.1 mRNA downstream 793794 46546747 ~ 46574726 (+) False LOC110521126
XM_036976455.1 mRNA downstream 793794 46546747 ~ 46575079 (+) False LOC110521126
XM_036976456.1 mRNA downstream 793794 46546747 ~ 46575079 (+) True LOC110521126
XM_036976458.1 mRNA downstream 822220 46575173 ~ 46607805 (+) False mapre3b
XM_036976459.1 mRNA downstream 822220 46575173 ~ 46607805 (+) False mapre3b
TU403416 other upstream 34795 45689435 ~ 45698847 (+) True G355763
TU403390 other upstream 109638 45620266 ~ 45624004 (+) False G355753
TU403052 other upstream 669616 45063613 ~ 45064026 (+) True G355488
TU402960 other upstream 757813 44975036 ~ 44975829 (+) True G355413
TU402072 other upstream 1271651 44459693 ~ 44461991 (+) True G354819
TU404485 other downstream 613273 46366226 ~ 46373781 (+) True G356586
TU404630 other downstream 818602 46571555 ~ 46572865 (+) True G356693
TU404621 other downstream 867848 46620801 ~ 46623956 (+) False G356688
TU404623 other downstream 867848 46620801 ~ 46625417 (+) False G356688
TU404676 other downstream 898132 46651085 ~ 46651564 (+) True G356728

Expression Profile