RNA id: XM_036976455.1


Basic Information

Item Value
RNA id XM_036976455.1
length 2533
RNA type mRNA
GC content 0.55
exon number 8
gene id LOC110521126
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 46546747 ~ 46575079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcctgacagtagtagataataactcatagtcctgacagtaatagataataactcatagtcctgacagtaatagataataactcatagtcctgacagtagtagataataactcatagtcctgatgTCTAAGGTGAAGAGTAGTGAGACGGTGAAGGTAGTAATCCGCTGTCGCCCGTTAAACCGGAAAGAGGAGGCGGCAGCGGCTGGTGTTACCCGGACACCGGGAGGAGTGGGCGGGATCGTAGAAATGGACATGCGTCTGGGTCAGGTGGTCTTATGGAACCCTCACGGTCCGCCCGGCGAGCCGCGTAAGACGTTTACGTTCGACTCTGTGTACGACCCCTCGTCTAAACAGCGTGATCTTTATGATGAGACGGTGCGGCCGCTGATCGATTCCGTCCTAGACGGGTTTAACGGAACCATCTTCGCCTACGGCCAAACGGGTACCGGGAAGACCTACACCATGCAGGGGGTGTGGCTAGAGCCAGAGAGGCGGGGCGTCATCCCCAACGCCTTCGAACACGTCTTCACCCAGATCTCCCGCTCCTCCGCCGACCGCCAGTACCTGGTCAGAGCCTCTTACCTGGAGATCTACCGAGAGGAGATCAGGGATCTATTGGATCCCAACATGCACGCACCTCATGTCCCCAACGTGCACACTCACACCTACCGCACCCTGGAGCTGAGAGAGAGCCCGGAGAGTGGGGTGTATGTGCGTGACCTGACGTCGTGCGTGTGTAAGAGCGTGAAGGAGATACAGGAGCTGATGAACTTAGGGAACCAGGTGCGCTCGGTGGGAGCGACAGACATGAACGAACACTCTTCCCGTTCCCACACCCTGTTCCTCATCACGGTGGAGTGTTCCCTGCCGGGGCCAGATGGACGGCAGCACATCAGGGTTGGCCGGCTCAACCTGGTTGACCTAGCGGGCAGCGAGCGGCAGGCCAAGACGGGCGTCCACGGAGAACGCCTGAAAGAAGCTGCCAAGATCAACCTGTCTCTGTCGGCGCTAGGCAACGTGATCTCAGCCCTGGCAGACGGGCGTAGCGGCCACATTCCGTACCGAGACTCCAAATTGACACGGTTATTACAGGACTCCCTGGGGGGCAACGCCAAGACGGTGATGGTGGCTACACTAGGCCCCGCCCCCCAACACTACGAGGAGACCCTCACGACGCTCCGCTACGCTAACAGAGCTAAAAACATCCAGAACCAGCCAAGAGTTAACGAAGACCCTAAAGACGCCCTGCTCAGAGAGTTCCAGAAGGAGATCGCATGGCTCCGCGCACAGCTCAGCCACAGGGAAGGGAGGGGCAAACACaggaaggaggaaggggaggagggctGGGACGGAgaaggggatgaggagggagaagaggaggtggagaaggagaggacactGCAGGAGGGGAGGctggaagaggagaaggaggccaTCAGAGAAGATGGATCACTATTGGCTGAGGAGAAGCAGAGGCttttgggagagaaggagaggatgatggGAGATCTGAAGAAGGAGTGGGACGCCACCGAGCAGCTCACTGCCAAGTACaagGCGATGGAGAGCAAGCTGCTGGTTGGAGGGAAGAACATCATGGATCACACCAACGAACAGCAGAAGACCCTGGAGATACGCAGACAAGAGATCGCTgagcagAgtcgtagagagagggagattgagcaGCAGGTGATGGTTCAGGATGAAGAGACTCTAGAACTCAAAGAAACATTCTCCTCCCTGCAACAGGAAGTGGAGGCCAAGACCAAGAAACTaaaaaagCTCTATGCTAAGCTACAGTGTGTGAAGGCTGAGATCCAGGATGTTAATGATGAGCATGTCAGGAGTCGACAGGAGCTGGAGCAGACGCAGAACCAACTCACCAGAGAACTCAAGTTCAAgtatctGATCATAGAGAACTTCATTCCTCCGGAGGAGAAGAATAAGATCATGAACAGACTGACCTTTGACCCTGAGGAGGACCAGTGGAAGTTCACACCCCTCGtccctgcagagaggtcaggtcagTTCAGCCAGATGAAGAAGAGGCCGGCTTCTGCAGTCGGATACAAACGACCAATCAGCCAGTACGCACGGGTCTCCTTAGTGATGGGAGCTCACTCCAGATAccgggctgagaACATCATGTTCCTGGAGCTGGACATGACTCATCCCACCACTGTCTCATTGGACCACAGGCCATCGGAGGTGGGGCCTAATTATAGCCCCTACCCAACAGACAACGTTCCCCACAGGGAGCGAGCTGCACGTGTCCGCATGTCACGATCCTGGTGTCAGACCCCGCGAGCCATcacttcctccacctccaccGTTTCCCTGACAACCCATTCTACAGCCACGCCCACTGCCGCCCAGTGAAGAGCAGCCTACTTCACTACCTATCccttccatatctctctctcccttccatatttctctctctccttctccatatctctccctctccatatctctccctctcccttccatatttttctctctccctatctcctttccatctctcccttcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU404522 lncRNA upstream 69796 46473595 ~ 46476951 (+) False G356621
TU404524 lncRNA upstream 69796 46473595 ~ 46476951 (+) True G356621
TU404532 lncRNA upstream 113384 46432981 ~ 46433363 (+) True G356628
TU404517 lncRNA upstream 130740 46415690 ~ 46416007 (+) True G356617
TU404488 lncRNA upstream 146141 46396569 ~ 46400606 (+) True G356589
TU404640 lncRNA downstream 16876 46591955 ~ 46592330 (+) True G356702
TU404579 lncRNA downstream 30921 46606000 ~ 46607810 (+) True mapre3b
TU404624 lncRNA downstream 45722 46620801 ~ 46625417 (+) False G356688
TU404620 lncRNA downstream 49711 46624790 ~ 46625417 (+) True G356688
TU404660 lncRNA downstream 57787 46632866 ~ 46633586 (+) True G356713
XM_036976447.1 mRNA upstream 793794 45733642 ~ 45752953 (+) False LOC110510408
XM_036976458.1 mRNA downstream 94 46575173 ~ 46607805 (+) False mapre3b
XM_036976459.1 mRNA downstream 94 46575173 ~ 46607805 (+) False mapre3b
XM_036976460.1 mRNA downstream 94 46575173 ~ 46607805 (+) False mapre3b
XM_036976462.1 mRNA downstream 94 46575173 ~ 46607805 (+) False mapre3b
XM_036976463.1 mRNA downstream 94 46575173 ~ 46607805 (+) False mapre3b
TU404485 other upstream 172966 46366226 ~ 46373781 (+) True G356586
TU403800 other upstream 793807 45733669 ~ 45752940 (+) False LOC110510408
TU403802 other upstream 793807 45733669 ~ 45752940 (+) False LOC110510408
TU403805 other upstream 793807 45733669 ~ 45752940 (+) True LOC110510408
TU403416 other upstream 847900 45689435 ~ 45698847 (+) True G355763
TU404621 other downstream 45722 46620801 ~ 46623956 (+) False G356688
TU404623 other downstream 45722 46620801 ~ 46625417 (+) False G356688
TU404676 other downstream 76006 46651085 ~ 46651564 (+) True G356728
TU404763 other downstream 209201 46784280 ~ 46784753 (+) True G356789

Expression Profile