RNA id: XM_036976460.1


Basic Information

Item Value
RNA id XM_036976460.1
length 2905
RNA type mRNA
GC content 0.48
exon number 10
gene id mapre3b
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 46575173 ~ 46607810 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctccctctcccttccatatatctccctctccatatctctccttctcccttccatatctctccttctcccttccatatctctccctttcccttcctaCTTCTAcacatctccttccctccctacaGGCTATGAACACTGAACTAAAGAAACGAGACATAAATGGCCTGTCTACCTACAGGCTATGAACACTGAACTAAAGAAACGAGACGTTTTGGCCTGTCTACCTACAGGCTATGAACACTGAACTAAAGAAACGAGATGTTTTGGCCTGTCTATCTACAGGCTATGAACACTGAACTAAAGAAACAAGATGTTTTGGCCTGTCTACCTACAGGCTATGAACACTGAACTAAAGAAACAAGATTATCGATGGTACTAGTAGTTTCTCCTCTGATTTCAATAATCAAAGATCAGGTTCGTGTTCTGAACTCTCAAGGAATCGCTGCCGCACACCGGATCAAAGTGAGATGGAGGAactcagagaaatgctgatgccTACTTCAAACATCATTGTTCCGCGAGCATCACATTGGAACATGGTTCAGTGGTTTTCCAGCATCTCCATTGAGAGAAATCTGTGCATCCAAGCAGAGGACACGCTGGAAAACAGAGGTCACAGGTCAGGGATCCCTCCTCTGTTGCCAATAGGAAAAGAGGGGCAGGGCTAGGTTGACCAGGTGAAGCAGGCAGCCAAACCTCAGACGAGCCAGGTGATGTAGATCCATCATGGCGTCCCGGGGATCCGAGGTGATGCAGTTGCGTTATGACGCAGGTGAAAACCTGCCGCTGTGGGACGCGCTGGGCGTACGGCTGAGCTGTGGTTGGGGCAGCAGCTCGTCGCTACGAACAAGCTGTAGCAACGCAGTAGTATCGACCGGACAGGCTCAGAACAGCACGATTCTTCAAAACTAGAGCGTTGATGGCGGTGAATGTATTCTCCATCTCTTCGGCTCTGGAGAACCTGAGTCGTCATGAGATGCTGTCCTGGGTCAACGACTCTCTACGGCTCACCTACACCAAGGTAGAACAACTGTGTTCAGgtgcaGCGTATTGTCAGTTCATGGACATGTTGTTCCCTGGCTGTGTCCTGCTGAAGAAGGTGAAGTTCTCAGCAATGCTGGAACATGAGTTCATCAAAAACTTCAAGGTCCTACAGGCTTCCTTCAAGagaatgggtgtagacaagatcATCCCAGTAGAGAGGCTGGTGAAGGGGAGGTTTCAGGATAACTTTGAGTTCATCCAGTGGTTTAAGAAGTTTTTTGATGCCAACTACGATGGGAAGGAGTATGACCCTGTGGCCACACGCCAGGGGCAGGAGGGCGCCCCCTCACCCAACCCAGGCCCCCAGAGGACGTCTCCCACGGCGACCAAGACATTCCACGCCTCCCCGAGGCCGATACAGTCCGCCCCCATCCGCAGGGCGAAGCCCACCAGAGCGTCAGACGCTGAGATACTAGAACTGAaccagcagatgttGGACCTGAAACTGACAGTGGATGGtcttgagaaggagagagatttCTACTTCAGTAAGCTGAGAGATATCGAGCTGATCTGTCAGGAGAATGAGACCAACACCAGCCCAACACTCTCCAAGATCATGGATATACTGTACGCTACTGAGGGCGAGGTTGACCTTCTCAGCCAACTTACctgataaataaagGAGGCGTTATATCACTTTGTGGAGGCAGCGGATGAGGAGGCGCCACATGGAACATTTCTCCCCGGATCAGCGCTTCAAGATCCTACCTCTATTTTATTACTCTCaacctcttccctcttcctcctgtccccctcctaccccctcctctctccctcctactccctactcccctccAACCCCCCAGACATGTCAGGCTAACGCTGTACACTGAATCGGTATGGTTGGTGTTAGCAGGATGCTAGGCTAATGGCTAATGTAAATTAGTTAACAGGGTAGCACAGAGCAAGAATCTATAGCGCCCTCTACAGATCGAGGCAGGTAACACAAACTCACTAATCTCTGAACCCATAAAATTCTGTCATGATTGTCTCGGATGAGGGGAGACGAAACTCCCTCCAGACTCACTGGTCCAGTTCAGTACCTACCATGTACATATGACCAGGGAGATCGTTGAAGAATCACTGCGGAATTGGATGTTGGGAAATGCCTTCAGAACCGGCCActggggcaacagtgagcgctattaCCATCCAGTAGACTTGGTTTTACCTTGAGGACAGGGGTGGTTAACTAACTAAGTGTAACCCTTCATTTAAACATGTTGACGTTTGGCGCAATGGGACACCACAGCAGTGTCAGAAACactgaaatttgacatttggataAACGTAGATGAATGATTAGTTCTGCAGTGAGACAGAGCTTGTTGCATATGACATATCAGTCCCTGCATTAACAATATGGACCAGTTGACCAGAACCATCCGAGTCCATTAGGACTCAGCAAAAACAATCAGAATGATCAAGAAGCCAACAATGCAGTGTGATTAGCTGAGGCCAGTAGGAAGCAGAGAACTGCTTCTGTTCAGTAGGGAGCAACATCCCAGGACATTCAGATAGAACCATACATTCTGCAGGTTTTAACCTCAATTTCCATTTGTGTTTTGAATGAGTTATTTAATGTTAGCTTGGAGTGGCTAACAGGTTAGCGTGAATCTATTACCCTGAGAAAGTTGAATAAAATGTATATGAGCAACACTACTCCACTGTATATACTAATGGATGAACATTAATttatttgaagtgtttttttTAGCAGCTGTTTATGATTGAGTTTCTTCTTGTTAGAGGCGGGGCTTAAATAGCTATCAGGGTTGTCATGGCAGACCTGTGACTGACATGCATCGTTAGAGTTTTATTACAGAGGCTGAATAAACAGTGGGTTCAAAACCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU404522 lncRNA upstream 98222 46473595 ~ 46476951 (+) False G356621
TU404524 lncRNA upstream 98222 46473595 ~ 46476951 (+) True G356621
TU404532 lncRNA upstream 141810 46432981 ~ 46433363 (+) True G356628
TU404517 lncRNA upstream 159166 46415690 ~ 46416007 (+) True G356617
TU404488 lncRNA upstream 174567 46396569 ~ 46400606 (+) True G356589
TU404624 lncRNA downstream 12996 46620801 ~ 46625417 (+) False G356688
TU404620 lncRNA downstream 16985 46624790 ~ 46625417 (+) True G356688
TU404660 lncRNA downstream 25061 46632866 ~ 46633586 (+) True G356713
TU404671 lncRNA downstream 37712 46645517 ~ 46647811 (+) False G356723
TU404670 lncRNA downstream 38431 46646236 ~ 46647811 (+) True G356723
XM_036976455.1 mRNA upstream 94 46546747 ~ 46575079 (+) False LOC110521126
XM_036976456.1 mRNA upstream 94 46546747 ~ 46575079 (+) True LOC110521126
XM_036976457.1 mRNA upstream 447 46546747 ~ 46574726 (+) False LOC110521126
XM_036976450.1 mRNA upstream 822220 45733642 ~ 45752953 (+) False LOC110510408
XM_036976469.1 mRNA downstream 87083 46694888 ~ 46745623 (+) False agbl5
XM_036976468.1 mRNA downstream 87083 46694888 ~ 46745644 (+) False agbl5
XM_036976470.1 mRNA downstream 87083 46694888 ~ 46745644 (+) False agbl5
XM_036976467.1 mRNA downstream 87094 46694899 ~ 46745644 (+) False agbl5
XM_036976466.1 mRNA downstream 87108 46694913 ~ 46745644 (+) True agbl5
TU404630 other upstream 2308 46571555 ~ 46572865 (+) True G356693
TU404485 other upstream 201392 46366226 ~ 46373781 (+) True G356586
TU403800 other upstream 822233 45733669 ~ 45752940 (+) False LOC110510408
TU404621 other downstream 12996 46620801 ~ 46623956 (+) False G356688
TU404623 other downstream 12996 46620801 ~ 46625417 (+) False G356688
TU404676 other downstream 43280 46651085 ~ 46651564 (+) True G356728
TU404763 other downstream 176475 46784280 ~ 46784753 (+) True G356789

Expression Profile