RNA id: TCONS_00033230


Basic Information

Item Value
RNA id TCONS_00033230
length 205
lncRNA type antisense_over
GC content 0.35
exon number 1
gene id XLOC_015175
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5726464 ~ 5729675 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATCTCTCTGGTATCTGCGGGAAATAAAGCAGAGATTCAGGTTAGAAgattaaaaaaagacttaattaTGACTGTAGATGAACAAATAGGCAGTCAAAATGTGAAGTTTGAGAAAACATAAGCGATCAGTTCTTTCACTGTTGTTTTTACTGAACTGTACCGTAAAAATGTCCTATGTTGTGAAcggagtactgaaaaatcacac

Function

GO:

id name namespace
GO:0044391 ribosomal subunit cellular_component
GO:0005759 mitochondrial matrix cellular_component
GO:0005761 mitochondrial ribosome cellular_component
GO:0005763 mitochondrial small ribosomal subunit cellular_component
GO:0000313 organellar ribosome cellular_component
GO:0000314 organellar small ribosomal subunit cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005840 ribosome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

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Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030473 lncRNA upstream 828412 4894856 ~ 4898290 (+) True XLOC_015166
TCONS_00030459 lncRNA upstream 1641281 4074412 ~ 4085421 (+) False XLOC_015160
TCONS_00030452 lncRNA upstream 1949356 3774742 ~ 3777346 (+) False XLOC_015156
TCONS_00033461 lncRNA upstream 2119301 3606030 ~ 3607401 (+) True XLOC_015155
TCONS_00033229 lncRNA upstream 2256689 3468101 ~ 3470013 (+) True XLOC_015149
TCONS_00033462 lncRNA downstream 4221 5731127 ~ 5736505 (+) True XLOC_015176
TCONS_00033463 lncRNA downstream 114202 5841108 ~ 5852829 (+) False XLOC_015178
TCONS_00033464 lncRNA downstream 192344 5919250 ~ 5923388 (+) True XLOC_015179
TCONS_00033465 lncRNA downstream 249109 5976015 ~ 5999565 (+) True XLOC_015181
TCONS_00033231 lncRNA downstream 510875 6237781 ~ 6239318 (+) True XLOC_015185
TCONS_00030486 mRNA upstream 45044 5620742 ~ 5681658 (+) False XLOC_015174
TCONS_00030487 mRNA upstream 46400 5621529 ~ 5680302 (+) True XLOC_015174
TCONS_00030483 mRNA upstream 144930 5563077 ~ 5581772 (+) True XLOC_015173
TCONS_00030481 mRNA upstream 189775 5521671 ~ 5536927 (+) False XLOC_015172
TCONS_00030482 mRNA upstream 192623 5521672 ~ 5534079 (+) True XLOC_015172
TCONS_00030489 mRNA downstream 67002 5793908 ~ 5810326 (+) True XLOC_015177
TCONS_00030490 mRNA downstream 114202 5841108 ~ 5884404 (+) False XLOC_015178
TCONS_00030491 mRNA downstream 116788 5843694 ~ 5882389 (+) True XLOC_015178
TCONS_00030492 mRNA downstream 160720 5887626 ~ 5924301 (+) False XLOC_015179
TCONS_00030493 mRNA downstream 160978 5887884 ~ 5923507 (+) False XLOC_015179
TCONS_00030484 other upstream 48976 5587495 ~ 5677726 (+) False XLOC_015174
TCONS_00030485 other upstream 49058 5601043 ~ 5677644 (+) False XLOC_015174
TCONS_00030477 other upstream 337006 5380858 ~ 5389696 (+) True XLOC_015169
TCONS_00030468 other upstream 1438156 4281682 ~ 4288546 (+) True XLOC_015162
TCONS_00030445 other upstream 2158743 3565376 ~ 3567959 (+) True XLOC_015153
TCONS_00030507 other downstream 529541 6256447 ~ 6258795 (+) True XLOC_015187
TCONS_00030509 other downstream 640796 6367702 ~ 6367816 (+) True XLOC_015189
TCONS_00030520 other downstream 1405375 7132281 ~ 7138080 (+) False XLOC_015199
TCONS_00030528 other downstream 1667884 7394790 ~ 7394908 (+) True XLOC_015206
TCONS_00030532 other downstream 1993653 7720559 ~ 7720629 (+) True XLOC_015213