RNA id: XM_036976469.1


Basic Information

Item Value
RNA id XM_036976469.1
length 3043
RNA type mRNA
GC content 0.56
exon number 17
gene id agbl5
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 46694888 ~ 46745644 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTTCTTCCTGCCTGAGCCAATCAGCCACCGTGTTGTTGTTTCTCAGCTACTAGTGGGTTTGTTTGGGTTTAAAGAGCTGTTTGGTGATCGGGAAAGACACGAACGCCCCAAAAAATGAGCATCGTTCACAAATAAggtggtgtgaGTACCAGCCGGCCCCGAGGTTAGGTCAGAGGTCATGGAGGTTCGTGTTGGAAGCGTGGTGTTCAGCTCCAGGTTTGACTCTGGAAACCTGGGCCGCGTGGAGAAGGTTGACTCCTTCCCCTCCGACGCCGCCTGTCCCACTTCCACAACCCTTAGCAGCACCCCCGACTACGAGTTTAATGTCTGGACGCGCCCTGACTGTGCCGGGACAGAACACGAGAATGGAAACAGGTCCTGGTTCTACTTCAGTGTGCGTGGTGCTTTGCCGGGGCGAATGCTGAAGGTCAATGTAATGAATATGAACAAGCAGAGTAAACTGTACAACCAGGGAATGGCTCCTCTAGTCAAGACTGTACCTGGTAGGACACGCTGGGAGAGAGTACGGGACAGACCCACATACGAGaTGGTGGATAATCAGTTCATCCTGTCGTTTACCCATCGTCTGTTGGAAGTGAAAGGAGCGACCACGTTCTTCTCCTTTAGTTTCCCCTTCTCCTACAGCGAGAGTCAAGACCTGCTGACACAACTGGACCAGAGATACCCTGACACAGCCACGCTCAcacccaggtgTGGTGACAGTGTATACTTCCACAGGGAGGTGTTGTGTCACTCTCTGGATGGTAACCGAGTGGATCTGCTGACGGTCACCAGCTGTCTCGGCatgcaggaagagagagaacaccgCCTGGACAAACTATTTCCTGATGCAGAGACCCCACGACCTCATCGCTTCACTGGCAAACAGgtgttttTCCTCAGTAGTCGTGTACACCCGGGGGAGACGCCATCGTCGTTTGTCTTTAAGGGCTTCTTAAACTTCATCCTGCGTCATGACGACCCCAGAGCTCACACACTCCGCAACATGTTTGTCTTCAAACTCATCCCCATGCTGAACCCGGACGGGGTGGTACGCGGacactacagGACTGACTCTAGAGGGGTGAATCTGAACAGACAGTATCTGAACCCTAGTCCTgatctccacccctccatctacGCTGCTAAAACACTGCTGctctaccaccacacacacaaccgcaccacacacacacactccaacacgcacatcaacacacactctaacacacacacctacaaccCACCTCAAGCACCTCCCCTCAGCACCAAACCCACCAATCAGAGCCCTGCCCTACACCTCACCCCTTTGGAACTCAGCCTCAACCAACGGAACGCTGATAAAGACTCTAACCCCGCCCCCTCAGAGATCGCCATGGTTATGGAGGAGATCGCCTGGGTAACCATGGAGACCGGGAAGAGGGAGGGGCAGGGGGATGGAAGGTGCTGTGAAGACGAGAATGATTCGCAGAGCGTCTCAGAGTCCACGCCCACATCAGTACCTCTGGAGATGTCAGTCATAGCCGGGGAACCAATCCCTGCGCAGGAGGGGGGAGTGGCCTATTACGTGGACCTGCATGGCCACGCTTCCAAACGTGGCTGCTTCATGTACGGCAACAGCCTATCAGACGAAAACcagcagGTGGAGAACATGTTGTACCCTAAGCTGATAGCTGTGAACTCCGCCCACTTTGACTTCCATGGTTGTAACTTCTCCGAGAAGAACATGTACGCCCGCGACAAGAGAGACGGTCAGAGCAAAGAGGGCAGTGGACGCGTGGCCATGCACAAAGCTATAGGACTACTACACAGCTATACGTTGGAGTGCAACTACAACACGGGGAGGACAGTCAACACCATCCCTCCTGCCTGCCATGACAACGGACGAGccacacctcctccccctcccgcATTCCCCCCCAAATATACCCCCGAGATATTCGAACAggtgggGCGTGCGGTTGCCATAGCAGCCCTGGACATGGCTGACTGCAACCCGTGGCCACGCCTCGTCCTTTCAGAACACAGCAGCTTGACCAACCTCCGCGCCTGGACTCTCAAACACGTCCGCAACAGCAAGGGCctcaacacacacgcacagccacGGACACACACCAGCGGGAACAAGGCGTCACCACCCAAGAGCTTCAATACgtctctGACCAGTTCTGCATCAGACACGTCTCTGAGTCATGCTCGTTGTAACAGGCACAGCAGTAGCAGCCAGACACCGTCTCCTCAGATACACACCTCGCCGAGCCTCACCTTCGGTTccacgcacaacacacacacacaacgcggGGGGAGCAAGGCACTCGGACCTGTCCGAGaCGCTAAAACTCAGGAGAAGAGAcgccccccccaccaccaccgctCCGTCCTCCGGTCGTCTCCTAGCAACAgccacccccccaccccagccCGGCCCCCGTcatcccccacctcctcctcttcctcctcctcgtcctcctcggtGGCGTCCTGTCCTCTCCCAGGCTACAGCTGTCCAGACGTGCTGggggtggtggggaggagagagttcCCTATCCGGCCGGGACGAccaaacacacagGCTGCTGGAAAAGAGGAACCTCTGAACATCCTGTCCTCAATCAAGTACaccaggtgTGAGCTGCAGCCTCGGGCCAGCCGTATTCCCATTAGGAGGGCGGAGTCAACCACAGACACTCCCACTGCTGGCCTTAACCCCACTTCCTCTGGCAGCTGGGAGGAGTCAACTACCATGAGGGTCTGGAGACTCCTGAAACCTGGCCTCCGCAGACacctaggtgtgTCGGAGAAGGAGGTTCCTTCGTTGCGTCTTGTTTCCAGAGCCCTGCTGAAGAACACGGACAGGAGTTCCCTCTACACACATTCTAGTACTGAAGACACCACAGAGCCACAATGTGTCCTGTCTTTGTAGGTTTGTGAGGAGAAGACCGGGTTCGAGGCTGAggcagtgtctgtgtgtgaaacaGCACCCCTGTGTGGAGAGGCATGATAACTACACATTCCCAACCAGGACAGTGGGGACTGGATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU404671 lncRNA upstream 47077 46645517 ~ 46647811 (+) False G356723
TU404670 lncRNA upstream 47077 46646236 ~ 46647811 (+) True G356723
TU404660 lncRNA upstream 61302 46632866 ~ 46633586 (+) True G356713
TU404624 lncRNA upstream 69471 46620801 ~ 46625417 (+) False G356688
TU404620 lncRNA upstream 69471 46624790 ~ 46625417 (+) True G356688
TU404724 lncRNA downstream 4499 46750122 ~ 46755469 (+) True G356754
TU404769 lncRNA downstream 56417 46802040 ~ 46802750 (+) True G356795
XM_036976458.1 mRNA upstream 87083 46575173 ~ 46607805 (+) False mapre3b
XM_036976459.1 mRNA upstream 87083 46575173 ~ 46607805 (+) False mapre3b
XM_036976460.1 mRNA upstream 87083 46575173 ~ 46607805 (+) False mapre3b
XM_036976462.1 mRNA upstream 87083 46575173 ~ 46607805 (+) False mapre3b
XM_036976463.1 mRNA upstream 87083 46575173 ~ 46607805 (+) False mapre3b
TU404676 other upstream 43324 46651085 ~ 46651564 (+) True G356728
TU404623 other upstream 69471 46620801 ~ 46625417 (+) False G356688
TU404621 other upstream 70932 46620801 ~ 46623956 (+) False G356688
TU404630 other upstream 122023 46571555 ~ 46572865 (+) True G356693
TU404485 other upstream 321107 46366226 ~ 46373781 (+) True G356586
TU404763 other downstream 38657 46784280 ~ 46784753 (+) True G356789

Expression Profile