RNA id: TCONS_00030526


Basic Information

Item Value
RNA id TCONS_00030526
length 1193
RNA type mRNA
GC content 0.46
exon number 8
gene id XLOC_015204
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 7279646 ~ 7286309 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAATCATTCTGTGCCACTGGAGCTTCAGCTGGCGGCTATACGAGCGTTCAGGAGAATCCCATGCCATCAGGACAGAAAAGTCCTTGCTCAGGTATTTCAAAGACAGCAAGAGAATGTGGAGGTCAGAATTGCAGCATATCAGCAGCTCATGCACTGCCCAAACCAGGAGATTTTCACACTTGTGAAGACAACTTTAAGCAATGAGAAGTCCAGTCAAGTTGGGTCATTTGTTTGGAGTCACCTTTTTAATATCCAGAAAACAGAAGACCCTCTGAAGAAATACCTGATGGAGTCACTTCCAGATGACATTATTAGCAGAGACTTTGAAGCAGAACCATGGAAATATTCTTCTCATATGGATTACACCGTGGACACGGGAGTGGCTGCTGCAAACGTGGAGGGAGCTCTGGTTTTCTCCCCCCAGTCTTTTCTTCCCAGTTATGCTATGGCTAATCTGACAGTATTCATCCTAGGCAGAGCATTCAATCTTCTGGAgATTAGCCTTAGAATGGAAAACCTTGAGCCTCTTCTTAAGACAGTGTTTGAGCAGCAACCTCTAGCATCTGCTGATCACTCCGGACCTTCAGCTCAAGCAGACTCTGTGAAGAAGAAGGAGAGAAACAGTAATAGTGATGGCTGTCAGTCCGCAACATTCAGTTCCATGAGGACTAAGTTCACAGAGCAGAGGAAAAAGGACAGAACCCTCCATTGCTGGATAAACGTGAAGATGTTTGGCAATGACATGACCTTTATGACCTGTGATGACCTGCATTCGTATCAGAGAAAGCTGTCCCTTAGTACAGCTGGTGTTGTTGTCAAATTGTTAAAGGGTCAGGAGATAAAACTCAGCCAAAAGCCAGTTGTTCTGGCAGAGGAACTGGTTTTACCATCCCTCTCCGGATTACCCATGAGGCTCAGCATCAACATGTCCGCTCTGTTTTCCCTCAGACTTAAAGGCATCTCTAACTATAAGAATTGGTCACACTTCTCACTGGCTGGCTATATCAAACCAAGTGCATTGGTTGGCATCTCTGTGAGAGCTGGAGTTGACGGAGCAATAGGCCGTGTGGGATTAGAGTGGGTCACTCAACTCAAAACCTCCACCAGCTTGGATGGAGCTGTCTATCTGCACCACGGGCAGAACCTGAAGTTGGTTCTCAACACTCCAGAAGATGTCATGGATATACTGACC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000147855

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033233 lncRNA upstream 16435 7261348 ~ 7263211 (+) True XLOC_015203
TCONS_00033469 lncRNA upstream 70555 7208050 ~ 7209091 (+) True XLOC_015201
TCONS_00033468 lncRNA upstream 124455 7149154 ~ 7155191 (+) False XLOC_015200
TCONS_00033232 lncRNA upstream 125554 7149546 ~ 7154092 (+) True XLOC_015200
TCONS_00033467 lncRNA upstream 174114 7075220 ~ 7105532 (+) False XLOC_015197
TCONS_00033470 lncRNA downstream 58263 7344572 ~ 7353165 (+) True XLOC_015205
TCONS_00033471 lncRNA downstream 225168 7511477 ~ 7514181 (+) True XLOC_015207
TCONS_00033234 lncRNA downstream 240533 7526842 ~ 7529057 (+) True XLOC_015208
TCONS_00033235 lncRNA downstream 326857 7613166 ~ 7614060 (+) True XLOC_015210
TCONS_00033236 lncRNA downstream 361554 7647863 ~ 7654618 (+) True XLOC_015211
TCONS_00030524 mRNA upstream 43352 7213146 ~ 7236294 (+) False XLOC_015202
TCONS_00030525 mRNA upstream 44486 7213219 ~ 7235160 (+) True XLOC_015202
TCONS_00030523 mRNA upstream 69941 7192966 ~ 7209705 (+) False XLOC_015201
TCONS_00030522 mRNA upstream 131197 7132292 ~ 7148449 (+) True XLOC_015199
TCONS_00030521 mRNA upstream 131568 7132292 ~ 7148078 (+) False XLOC_015199
TCONS_00030527 mRNA downstream 9206 7295515 ~ 7412581 (+) False XLOC_015205
TCONS_00030529 mRNA downstream 271603 7557912 ~ 7587660 (+) True XLOC_015209
TCONS_00030531 mRNA downstream 429501 7715810 ~ 7727248 (+) False XLOC_015213
TCONS_00030537 mRNA downstream 532059 7818368 ~ 7829400 (+) True XLOC_015219
TCONS_00030538 mRNA downstream 561171 7847480 ~ 7874075 (+) False XLOC_015220
TCONS_00030520 other upstream 141566 7132281 ~ 7138080 (+) False XLOC_015199
TCONS_00030509 other upstream 911830 6367702 ~ 6367816 (+) True XLOC_015189
TCONS_00030507 other upstream 1020851 6256447 ~ 6258795 (+) True XLOC_015187
TCONS_00030484 other upstream 1601920 5587495 ~ 5677726 (+) False XLOC_015174
TCONS_00030528 other downstream 108481 7394790 ~ 7394908 (+) True XLOC_015206
TCONS_00030532 other downstream 434250 7720559 ~ 7720629 (+) True XLOC_015213
TCONS_00030533 other downstream 434630 7720939 ~ 7721009 (+) True XLOC_015214
TCONS_00030534 other downstream 434903 7721212 ~ 7721390 (+) True XLOC_015215
TCONS_00030535 other downstream 437085 7723394 ~ 7723583 (+) True XLOC_015216

Expression Profile

Expression of TCONS_00030526 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 5.
End of interactive chart.
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Expression of TCONS_00030526 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 5.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_00518979_00527648.mRNA True 1545 mRNA 0.45 10 CI01000004 518979 ~ 527648 (-)