RNA id: TCONS_00030528



Basic Information


Item Value
RNA id TCONS_00030528
length 119
RNA type rRNA
GC content 0.55
exon number 1
gene id XLOC_015206
representative True

Chromosome Information


Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 7394790 ~ 7394908 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GTTGGCcgtcagctagctctctgcaactatcacatggttgcccactgcagctaagcagggctgcgcctggtcagtacctggatgggagatcaaatgagaaagctaggttgctgccagaa

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000116872

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00033470 lncRNA upstream 41625 7344572 ~ 7353165 (+) True XLOC_015205
TCONS_00033233 lncRNA upstream 131579 7261348 ~ 7263211 (+) True XLOC_015203
TCONS_00033469 lncRNA upstream 185699 7208050 ~ 7209091 (+) True XLOC_015201
TCONS_00033468 lncRNA upstream 239599 7149154 ~ 7155191 (+) False XLOC_015200
TCONS_00033232 lncRNA upstream 240698 7149546 ~ 7154092 (+) True XLOC_015200
TCONS_00033471 lncRNA downstream 116569 7511477 ~ 7514181 (+) True XLOC_015207
TCONS_00033234 lncRNA downstream 131934 7526842 ~ 7529057 (+) True XLOC_015208
TCONS_00033235 lncRNA downstream 218258 7613166 ~ 7614060 (+) True XLOC_015210
TCONS_00033236 lncRNA downstream 252955 7647863 ~ 7654618 (+) True XLOC_015211
TCONS_00033472 lncRNA downstream 262390 7657298 ~ 7661498 (+) False XLOC_015212
TCONS_00030526 mRNA upstream 108481 7279646 ~ 7286309 (+) True XLOC_015204
TCONS_00030524 mRNA upstream 158496 7213146 ~ 7236294 (+) False XLOC_015202
TCONS_00030525 mRNA upstream 159630 7213219 ~ 7235160 (+) True XLOC_015202
TCONS_00030523 mRNA upstream 185085 7192966 ~ 7209705 (+) False XLOC_015201
TCONS_00030522 mRNA upstream 246341 7132292 ~ 7148449 (+) True XLOC_015199
TCONS_00030529 mRNA downstream 163004 7557912 ~ 7587660 (+) True XLOC_015209
TCONS_00030531 mRNA downstream 320902 7715810 ~ 7727248 (+) False XLOC_015213
TCONS_00030537 mRNA downstream 423460 7818368 ~ 7829400 (+) True XLOC_015219
TCONS_00030538 mRNA downstream 452572 7847480 ~ 7874075 (+) False XLOC_015220
TCONS_00030539 mRNA downstream 454982 7849890 ~ 7869613 (+) False XLOC_015220
TCONS_00030520 other upstream 256710 7132281 ~ 7138080 (+) False XLOC_015199
TCONS_00030509 other upstream 1026974 6367702 ~ 6367816 (+) True XLOC_015189
TCONS_00030507 other upstream 1135995 6256447 ~ 6258795 (+) True XLOC_015187
TCONS_00030484 other upstream 1717064 5587495 ~ 5677726 (+) False XLOC_015174
TCONS_00030485 other upstream 1717146 5601043 ~ 5677644 (+) False XLOC_015174
TCONS_00030532 other downstream 325651 7720559 ~ 7720629 (+) True XLOC_015213
TCONS_00030533 other downstream 326031 7720939 ~ 7721009 (+) True XLOC_015214
TCONS_00030534 other downstream 326304 7721212 ~ 7721390 (+) True XLOC_015215
TCONS_00030535 other downstream 328486 7723394 ~ 7723583 (+) True XLOC_015216
TCONS_00030536 other downstream 328962 7723870 ~ 7723941 (+) True XLOC_015217

Expression Profile


Expression of TCONS_00030528 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.
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Expression of TCONS_00030528 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.