Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00030531 |
| length | 1825 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 11 |
| gene id | XLOC_015213 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 7715792 ~ 7727248 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0044085 | cellular component biogenesis | biological_process |
| GO:0016072 | rRNA metabolic process | biological_process |
| GO:0022613 | ribonucleoprotein complex biogenesis | biological_process |
| GO:0071840 | cellular component organization or biogenesis | biological_process |
| GO:0034470 | ncRNA processing | biological_process |
| GO:0006364 | rRNA processing | biological_process |
| GO:0031290 | retinal ganglion cell axon guidance | biological_process |
| GO:0006396 | RNA processing | biological_process |
| GO:0048598 | embryonic morphogenesis | biological_process |
| GO:0042254 | ribosome biogenesis | biological_process |
| GO:0000470 | maturation of LSU-rRNA | biological_process |
| GO:0042273 | ribosomal large subunit biogenesis | biological_process |
| GO:0007369 | gastrulation | biological_process |
| GO:0031167 | rRNA methylation | biological_process |
| GO:0034660 | ncRNA metabolic process | biological_process |
| GO:0042060 | wound healing | biological_process |
| GO:0030684 | preribosome | cellular_component |
| GO:0045111 | intermediate filament cytoskeleton | cellular_component |
| GO:0005882 | intermediate filament | cellular_component |
| GO:0099513 | polymeric cytoskeletal fiber | cellular_component |
| GO:0005730 | nucleolus | cellular_component |
| GO:0003723 | RNA binding | molecular_function |
| GO:0140102 | catalytic activity, acting on a rRNA | molecular_function |
| GO:0008649 | rRNA methyltransferase activity | molecular_function |
| id | description |
|---|---|
| ko03230 | Viral genome structure |
| ko05164 | Influenza A |
| ko05016 | Huntington disease |
| ko03200 | Viral proteins |
| id | description |
|---|---|
| ZDB-GENE-040426-2802 | Predicted to enable translation initiation factor activity. Predicted to be involved in cytoplasmic translational initiation. Predicted to act upstream of or within translational initiation. Is expressed in several structures, including alar plate midbrain region; head; immature eye; midbrain; and segmental plate. Orthologous to human EIF4A2 (eukaryotic translation initiation factor 4A2). |
| ensembl_id | ENSDART00000130781 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033237 | lncRNA | upstream | 53709 | 7657408 ~ 7662101 (+) | True | XLOC_015212 |
| TCONS_00033472 | lncRNA | upstream | 54312 | 7657298 ~ 7661498 (+) | False | XLOC_015212 |
| TCONS_00033236 | lncRNA | upstream | 61192 | 7647863 ~ 7654618 (+) | True | XLOC_015211 |
| TCONS_00033235 | lncRNA | upstream | 101750 | 7613166 ~ 7614060 (+) | True | XLOC_015210 |
| TCONS_00033234 | lncRNA | upstream | 186753 | 7526842 ~ 7529057 (+) | True | XLOC_015208 |
| TCONS_00033474 | lncRNA | downstream | 36659 | 7763907 ~ 7768273 (+) | False | XLOC_015218 |
| TCONS_00033475 | lncRNA | downstream | 36663 | 7763911 ~ 7768273 (+) | True | XLOC_015218 |
| TCONS_00033476 | lncRNA | downstream | 757146 | 8484394 ~ 8488138 (+) | False | XLOC_015225 |
| TCONS_00033238 | lncRNA | downstream | 757763 | 8485011 ~ 8488138 (+) | False | XLOC_015225 |
| TCONS_00033239 | lncRNA | downstream | 757792 | 8485040 ~ 8488138 (+) | False | XLOC_015225 |
| TCONS_00030529 | mRNA | upstream | 128150 | 7557912 ~ 7587660 (+) | True | XLOC_015209 |
| TCONS_00030527 | mRNA | upstream | 303229 | 7295515 ~ 7412581 (+) | False | XLOC_015205 |
| TCONS_00030526 | mRNA | upstream | 429501 | 7279646 ~ 7286309 (+) | True | XLOC_015204 |
| TCONS_00030524 | mRNA | upstream | 479516 | 7213146 ~ 7236294 (+) | False | XLOC_015202 |
| TCONS_00030525 | mRNA | upstream | 480650 | 7213219 ~ 7235160 (+) | True | XLOC_015202 |
| TCONS_00030537 | mRNA | downstream | 91120 | 7818368 ~ 7829400 (+) | True | XLOC_015219 |
| TCONS_00030538 | mRNA | downstream | 120232 | 7847480 ~ 7874075 (+) | False | XLOC_015220 |
| TCONS_00030539 | mRNA | downstream | 122642 | 7849890 ~ 7869613 (+) | False | XLOC_015220 |
| TCONS_00030540 | mRNA | downstream | 124245 | 7851493 ~ 7874384 (+) | True | XLOC_015220 |
| TCONS_00030541 | mRNA | downstream | 303986 | 8031234 ~ 8050498 (+) | False | XLOC_015221 |
| TCONS_00030528 | other | upstream | 320902 | 7394790 ~ 7394908 (+) | True | XLOC_015206 |
| TCONS_00030520 | other | upstream | 577730 | 7132281 ~ 7138080 (+) | False | XLOC_015199 |
| TCONS_00030509 | other | upstream | 1347994 | 6367702 ~ 6367816 (+) | True | XLOC_015189 |
| TCONS_00030507 | other | upstream | 1457015 | 6256447 ~ 6258795 (+) | True | XLOC_015187 |
| TCONS_00030485 | other | upstream | 2038166 | 5601043 ~ 5677644 (+) | False | XLOC_015174 |
| TCONS_00030543 | other | downstream | 318168 | 8045416 ~ 8047257 (+) | True | XLOC_015221 |
| TCONS_00030545 | other | downstream | 462037 | 8189285 ~ 8189400 (+) | True | XLOC_015223 |
| TCONS_00030568 | other | downstream | 2104090 | 9831338 ~ 9833806 (+) | False | XLOC_015238 |
| TCONS_00030569 | other | downstream | 2110784 | 9838032 ~ 9841864 (+) | False | XLOC_015238 |
| TCONS_00030571 | other | downstream | 2148281 | 9875529 ~ 9875645 (+) | True | XLOC_015239 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000004_00295547_00301616.mRNA | True | 1056 | mRNA | 0.47 | 8 | CI01000004 | 295471 ~ 301616 (-) |
