RNA id: TU365289


Basic Information

Item Value
RNA id TU365289
length 631
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G322423
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 13572159 ~ 13572890 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacatatggaatcatgtagtaaccgaagAAGCGTTAAACAACagtttagattttagattcttaaaagtagccaccctttgcctttgacagcgtTGCAgactctaggcattctctcaaccagcttcacctggaatgcttttctaacagttttgaaggatttcccacatatgctgagcacttggctgcttttccttccctctgcggtccaactcatcccaaaccatctcaattgctgaggctggtaactctaatgaacatatcctctgcagcagagggtctctctggttcttcctttcctgtggtggtcctcgtgagagccagtttcatcatagcgattgatcgtttttgcaactgcacttttccatattgactgaccttcatgtcttaaagtaatgatggactgtcttttctcttttcttatttgacctgttcttgccataatatgaacttgggtcttttaccaaatggggctatgttctgtataccacccctaccttgtcacgacacagctgattggctaaaacacattgcaaaggaaagaaattccacaaatgaactttaacaaggcacacctgttaactgaaatgcattccaggtgactacctcatgaagctggttgtgagaatgccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU365279 lncRNA downstream 167 13570476 ~ 13572093 (-) False G322421
TU365278 lncRNA downstream 167 13570558 ~ 13572093 (-) True G322421
TU365294 lncRNA downstream 5122 13565623 ~ 13567138 (-) True G322426
TU365293 lncRNA downstream 6844 13562978 ~ 13565416 (-) True G322425
TU365141 lncRNA downstream 52591 13519421 ~ 13519669 (-) True G322291
TU365292 lncRNA upstream 86 13572976 ~ 13573240 (-) True LOC110522125
TU365437 lncRNA upstream 149998 13722888 ~ 13723132 (-) True G322563
TU365454 lncRNA upstream 163078 13735968 ~ 13736179 (-) True G322580
TU365618 lncRNA upstream 226359 13799249 ~ 13799623 (-) True G322732
TU365619 lncRNA upstream 250936 13823826 ~ 13871569 (-) True G322733
XM_036975672.1 mRNA downstream 375025 13175568 ~ 13197235 (-) False LOC110522122
XM_036975671.1 mRNA downstream 375027 13175568 ~ 13197233 (-) False LOC110522122
XM_036975673.1 mRNA downstream 375028 13175568 ~ 13197232 (-) False LOC110522122
XM_021600246.2 mRNA downstream 375039 13175568 ~ 13197221 (-) False LOC110522122
XM_036975674.1 mRNA downstream 375041 13175568 ~ 13197219 (-) False LOC110522122
XM_021600255.2 mRNA upstream 3 13572893 ~ 13647260 (-) False LOC110522125
XM_036975675.1 mRNA upstream 3 13572893 ~ 13647261 (-) False LOC110522125
XM_021600256.2 mRNA upstream 3 13572893 ~ 13647262 (-) False LOC110522125
XM_036975676.1 mRNA upstream 3 13572893 ~ 13647262 (-) False LOC110522125
XM_021600250.2 mRNA upstream 3 13572893 ~ 13647265 (-) False LOC110522125
TU364719 other downstream 389691 13173776 ~ 13182569 (-) True LOC110522122
TU364641 other downstream 589497 12981777 ~ 12982763 (-) False lyrm2
TU364397 other downstream 1024743 12546483 ~ 12547517 (-) True LOC110522115
TU363650 other downstream 1253862 12318003 ~ 12318398 (-) True G320883
TU363167 other downstream 1678687 11891871 ~ 11893573 (-) False LOC110522088
TU366076 other upstream 555599 14128489 ~ 14187171 (-) True G323167
TU367449 other upstream 1680974 15253864 ~ 15255008 (-) True G324432
TU368604 other upstream 2446538 16019428 ~ 16104688 (-) True rnf217
TU368823 other upstream 2766442 16339332 ~ 16340707 (-) True G325696
TU369118 other upstream 3073865 16646755 ~ 16662881 (-) True G325960

Expression Profile