RNA id: TU365476



Basic Information


Item Value
RNA id TU365476
length 206
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G322601
representative True

Chromosome Information


Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 13754167 ~ 13754372 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CATCAAAAGAGTCTGTCGATAACATTAGCTGTTTATCCATGACGTCTGGAGAACAACTTTTGCCCTTTTGACTGGAGGTAGTCGCAGTGTCACGTAAGACAGAGTACAAAATGAAATTGTTCAGTAACACATGAGCCTATGCTTCCTCCTTGGAGTTGAAAAATACTTGacattgagagaaaaaaaaactgagCTGAATTGGAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU365453 lncRNA upstream 17984 13735973 ~ 13736183 (+) True G322579
TU365391 lncRNA upstream 69806 13684106 ~ 13684361 (+) True G322518
TU365369 lncRNA upstream 83855 13670101 ~ 13670312 (+) True G322496
TU365187 lncRNA upstream 185483 13568430 ~ 13568684 (+) True G322337
TU365185 lncRNA upstream 188189 13565632 ~ 13565978 (+) True G322335
TU365484 lncRNA downstream 12532 13766904 ~ 13826678 (+) False G322608
TU365485 lncRNA downstream 69448 13823820 ~ 13871682 (+) True G322608
TU365513 lncRNA downstream 82682 13837054 ~ 13855757 (+) True G322636
TU365531 lncRNA downstream 103866 13858238 ~ 13860123 (+) True G322650
TU365569 lncRNA downstream 169264 13923636 ~ 13926446 (+) True G322685
XM_021600245.2 mRNA upstream 705032 13047347 ~ 13049135 (+) True LOC110522121
XM_036975662.1 mRNA upstream 708504 13034144 ~ 13045663 (+) False LOC110522103
XM_021598417.2 mRNA downstream 30342 13784714 ~ 13785790 (+) True LOC110520969
XM_021600257.2 mRNA downstream 37612 13791984 ~ 13801419 (+) True LOC110522126
XM_021600261.2 mRNA downstream 153947 13908319 ~ 13914582 (+) True LOC110522131
XM_021600266.2 mRNA downstream 180220 13934592 ~ 13954337 (+) False LOC110522133
XM_021600265.2 mRNA downstream 183051 13937423 ~ 13954337 (+) True LOC110522133
TU364241 other upstream 610724 13142947 ~ 13143443 (+) True G321447
TU364003 other upstream 772616 12980400 ~ 12981551 (+) True LOC110521046
TU364001 other upstream 941802 12800836 ~ 12812365 (+) True LOC110522108
TU363815 other upstream 1205053 12548470 ~ 12549114 (+) False LOC110522117
TU365525 other downstream 95915 13850287 ~ 13885503 (+) True G322645
TU368490 other downstream 2680881 16435253 ~ 16436634 (+) False G325389
TU371014 other downstream 4509918 18264290 ~ 18304442 (+) True G327705
TU371315 other downstream 4672782 18427154 ~ 18428907 (+) True G327995
TU371828 other downstream 5002483 18756855 ~ 18757545 (+) True G328474

Expression Profile