Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00033477 |
| length | 2319 |
| lncRNA type | inter_gene |
| GC content | 0.31 |
| exon number | 1 |
| gene id | XLOC_015225 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 8484394 ~ 8488138 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016072 | rRNA metabolic process | biological_process |
| GO:0022613 | ribonucleoprotein complex biogenesis | biological_process |
| GO:0045110 | intermediate filament bundle assembly | biological_process |
| GO:0034470 | ncRNA processing | biological_process |
| GO:0006364 | rRNA processing | biological_process |
| GO:0030490 | maturation of SSU-rRNA | biological_process |
| GO:2000026 | regulation of multicellular organismal development | biological_process |
| GO:0042254 | ribosome biogenesis | biological_process |
| GO:0000469 | cleavage involved in rRNA processing | biological_process |
| GO:0042274 | ribosomal small subunit biogenesis | biological_process |
| GO:0048340 | paraxial mesoderm morphogenesis | biological_process |
| GO:0048341 | paraxial mesoderm formation | biological_process |
| GO:0048646 | anatomical structure formation involved in morphogenesis | biological_process |
| GO:0003002 | regionalization | biological_process |
| GO:0007389 | pattern specification process | biological_process |
| GO:0061053 | somite development | biological_process |
| GO:0034660 | ncRNA metabolic process | biological_process |
| GO:0030684 | preribosome | cellular_component |
| GO:0005730 | nucleolus | cellular_component |
| GO:0030515 | snoRNA binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033474 | lncRNA | upstream | 717547 | 7763907 ~ 7768273 (+) | False | XLOC_015218 |
| TCONS_00033475 | lncRNA | upstream | 717547 | 7763911 ~ 7768273 (+) | True | XLOC_015218 |
| TCONS_00030530 | lncRNA | upstream | 762493 | 7715806 ~ 7723327 (+) | False | XLOC_015213 |
| TCONS_00033473 | lncRNA | upstream | 765107 | 7715792 ~ 7720713 (+) | False | XLOC_015213 |
| TCONS_00033237 | lncRNA | upstream | 823719 | 7657408 ~ 7662101 (+) | True | XLOC_015212 |
| TCONS_00033241 | lncRNA | downstream | 202520 | 8690658 ~ 8691029 (+) | True | XLOC_015227 |
| TCONS_00030555 | lncRNA | downstream | 326101 | 8814239 ~ 8825386 (+) | True | XLOC_015229 |
| TCONS_00033478 | lncRNA | downstream | 644447 | 9132585 ~ 9330209 (+) | True | XLOC_015231 |
| TCONS_00033479 | lncRNA | downstream | 828181 | 9316319 ~ 9318279 (+) | True | XLOC_015232 |
| TCONS_00033480 | lncRNA | downstream | 1163578 | 9651716 ~ 9657047 (+) | False | XLOC_015236 |
| TCONS_00030546 | mRNA | upstream | 173621 | 8261109 ~ 8312199 (+) | True | XLOC_015224 |
| TCONS_00030544 | mRNA | upstream | 371212 | 8112449 ~ 8114608 (+) | True | XLOC_015222 |
| TCONS_00030541 | mRNA | upstream | 435322 | 8031234 ~ 8050498 (+) | False | XLOC_015221 |
| TCONS_00030542 | mRNA | upstream | 438802 | 8031381 ~ 8047018 (+) | False | XLOC_015221 |
| TCONS_00030540 | mRNA | upstream | 611436 | 7851493 ~ 7874384 (+) | True | XLOC_015220 |
| TCONS_00030547 | mRNA | downstream | 161155 | 8649293 ~ 8663104 (+) | False | XLOC_015226 |
| TCONS_00030548 | mRNA | downstream | 161218 | 8649356 ~ 8660204 (+) | True | XLOC_015226 |
| TCONS_00030549 | mRNA | downstream | 229017 | 8717155 ~ 8777496 (+) | False | XLOC_015228 |
| TCONS_00030550 | mRNA | downstream | 229027 | 8717165 ~ 8726072 (+) | False | XLOC_015228 |
| TCONS_00030551 | mRNA | downstream | 229034 | 8717172 ~ 8731822 (+) | True | XLOC_015228 |
| TCONS_00030545 | other | upstream | 296420 | 8189285 ~ 8189400 (+) | True | XLOC_015223 |
| TCONS_00030543 | other | upstream | 438563 | 8045416 ~ 8047257 (+) | True | XLOC_015221 |
| TCONS_00030536 | other | upstream | 761879 | 7723870 ~ 7723941 (+) | True | XLOC_015217 |
| TCONS_00030535 | other | upstream | 762237 | 7723394 ~ 7723583 (+) | True | XLOC_015216 |
| TCONS_00030534 | other | upstream | 764430 | 7721212 ~ 7721390 (+) | True | XLOC_015215 |
| TCONS_00030568 | other | downstream | 1343200 | 9831338 ~ 9833806 (+) | False | XLOC_015238 |
| TCONS_00030569 | other | downstream | 1349894 | 9838032 ~ 9841864 (+) | False | XLOC_015238 |
| TCONS_00030571 | other | downstream | 1387391 | 9875529 ~ 9875645 (+) | True | XLOC_015239 |
| TCONS_00030577 | other | downstream | 1485743 | 9973881 ~ 9982953 (+) | True | XLOC_015242 |
| TCONS_00030590 | other | downstream | 1717863 | 10206001 ~ 10206118 (+) | True | XLOC_015249 |
