Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00030549 |
| length | 3907 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 24 |
| gene id | XLOC_015228 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 8717155 ~ 8777496 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006897 | endocytosis | biological_process |
| GO:0070536 | protein K63-linked deubiquitination | biological_process |
| GO:0016477 | cell migration | biological_process |
| GO:0071108 | protein K48-linked deubiquitination | biological_process |
| GO:0008277 | regulation of G protein-coupled receptor signaling pathway | biological_process |
| GO:0016579 | protein deubiquitination | biological_process |
| GO:0051298 | centrosome duplication | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0007411 | axon guidance | biological_process |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0005813 | centrosome | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004197 | cysteine-type endopeptidase activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004843 | thiol-dependent ubiquitin-specific protease activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0008233 | peptidase activity | molecular_function |
| GO:0008234 | cysteine-type peptidase activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-2323 | Predicted to enable cysteine-type endopeptidase activity; thiol-dependent deubiquitinase; and zinc ion binding activity. Predicted to be involved in several processes, including axon guidance; centrosome duplication; and protein deubiquitination. Predicted to act upstream of or within endocytosis and ubiquitin-dependent protein catabolic process. Predicted to be located in centrosome. Predicted to be active in cytoplasm. Orthologous to human USP33 (ubiquitin specific peptidase 33). |
| ensembl_id | ENSDART00000018114 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033241 | lncRNA | upstream | 26126 | 8690658 ~ 8691029 (+) | True | XLOC_015227 |
| TCONS_00033476 | lncRNA | upstream | 229017 | 8484394 ~ 8488138 (+) | False | XLOC_015225 |
| TCONS_00033238 | lncRNA | upstream | 229017 | 8485011 ~ 8488138 (+) | False | XLOC_015225 |
| TCONS_00033239 | lncRNA | upstream | 229017 | 8485040 ~ 8488138 (+) | False | XLOC_015225 |
| TCONS_00033477 | lncRNA | upstream | 229017 | 8485820 ~ 8488138 (+) | False | XLOC_015225 |
| TCONS_00030555 | lncRNA | downstream | 36743 | 8814239 ~ 8825386 (+) | True | XLOC_015229 |
| TCONS_00033478 | lncRNA | downstream | 355089 | 9132585 ~ 9330209 (+) | True | XLOC_015231 |
| TCONS_00033479 | lncRNA | downstream | 538823 | 9316319 ~ 9318279 (+) | True | XLOC_015232 |
| TCONS_00033480 | lncRNA | downstream | 874220 | 9651716 ~ 9657047 (+) | False | XLOC_015236 |
| TCONS_00033481 | lncRNA | downstream | 874504 | 9652000 ~ 9657047 (+) | False | XLOC_015236 |
| TCONS_00030547 | mRNA | upstream | 54051 | 8649293 ~ 8663104 (+) | False | XLOC_015226 |
| TCONS_00030548 | mRNA | upstream | 56951 | 8649356 ~ 8660204 (+) | True | XLOC_015226 |
| TCONS_00030546 | mRNA | upstream | 404956 | 8261109 ~ 8312199 (+) | True | XLOC_015224 |
| TCONS_00030544 | mRNA | upstream | 602547 | 8112449 ~ 8114608 (+) | True | XLOC_015222 |
| TCONS_00030541 | mRNA | upstream | 666657 | 8031234 ~ 8050498 (+) | False | XLOC_015221 |
| TCONS_00030552 | mRNA | downstream | 994 | 8778490 ~ 8842472 (+) | False | XLOC_015229 |
| TCONS_00030553 | mRNA | downstream | 1668 | 8779164 ~ 8806902 (+) | False | XLOC_015229 |
| TCONS_00030554 | mRNA | downstream | 2947 | 8780443 ~ 8840896 (+) | False | XLOC_015229 |
| TCONS_00030556 | mRNA | downstream | 284389 | 9061885 ~ 9138497 (+) | True | XLOC_015230 |
| TCONS_00030557 | mRNA | downstream | 758525 | 9536021 ~ 9558915 (+) | True | XLOC_015233 |
| TCONS_00030545 | other | upstream | 527755 | 8189285 ~ 8189400 (+) | True | XLOC_015223 |
| TCONS_00030543 | other | upstream | 669898 | 8045416 ~ 8047257 (+) | True | XLOC_015221 |
| TCONS_00030536 | other | upstream | 993214 | 7723870 ~ 7723941 (+) | True | XLOC_015217 |
| TCONS_00030535 | other | upstream | 993572 | 7723394 ~ 7723583 (+) | True | XLOC_015216 |
| TCONS_00030534 | other | upstream | 995765 | 7721212 ~ 7721390 (+) | True | XLOC_015215 |
| TCONS_00030568 | other | downstream | 1053842 | 9831338 ~ 9833806 (+) | False | XLOC_015238 |
| TCONS_00030569 | other | downstream | 1060536 | 9838032 ~ 9841864 (+) | False | XLOC_015238 |
| TCONS_00030571 | other | downstream | 1098033 | 9875529 ~ 9875645 (+) | True | XLOC_015239 |
| TCONS_00030577 | other | downstream | 1196385 | 9973881 ~ 9982953 (+) | True | XLOC_015242 |
| TCONS_00030590 | other | downstream | 1428505 | 10206001 ~ 10206118 (+) | True | XLOC_015249 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000003_02385930_02406911.mRNA | True | 2557 | mRNA | 0.51 | 18 | CI01000003 | 2385767 ~ 2406911 (-) |
