RNA id: TCONS_00033478


Basic Information

Item Value
RNA id TCONS_00033478
length 2810
lncRNA type read_through
GC content 0.37
exon number 2
gene id XLOC_015231
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9132585 ~ 9330209 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTCCTGTCACAGATCCatcttgcagtgtaaacacagtagCAATGAAACCTTACCCCacatagtcatgcagtgtgaaaacatctgtgatacGACTATTTTGAAATCCTGTAGTCTGAACAGCATTAATGACAGTGGTCATAAGCATAAAATCTCATGtctgtcatgattataaaggttcgAACACCCTTCAAGTAAAGCATGACCAATGATACTTACACAATTAAGTTTCTCTTTCAGATTTTAAGGcaaaacaagcaaacacaaaGATAAACAATGATTTCTGCATGGCGTCCACATACTTTCGTCATGTAGTGTTTATCACGGAGAAAATCAAGTACAACTCAGACATGAACAGCAGAAGCAGAGTGCGACAGCGGAGTGAAAGTGCTGTTTCTTGACCAGCTCTGTTTTATACCACATGACGAGCAAAATCAATAAAGAGGACAAGAAATGATGATCCTTGGGTCAGCACTCTGAGAAACTGAGCCGGCATCAATTGTTTTAATGAACAGCTTGGTCAAAGCAGTGAGCAGTATCTCATCCCCTTCCCTCCTTTCCATTCTATACATCAGTCTCTCATCCTTGTGCTGTATAGAGTTCTCCCTGCACATATCGagagtattttattttttccccaggcGAAAAACTGTGAGTGCTGGTCAAACATTCCCAGAGTGCTGCATTAGAAGATAAAGGCTGTCCAGGCAGAGCTGCCAAATGATGTCAGGATCCCAAGCTGATAAGAACATTCGTTACATACAGTATCGGTGAAGAAGAGTGTTTTTgatacataaaaatacaataaaaaaacactgaTAAGCACAGTGGACATCTCAAAGCAGTAGGGACGCATTAAGAGTGCTGCATTGTGTGCCGTTTTCTAGGATGCTACAACCTTTAGCTACAGTGGATGATCAAATTTACCTACTGATCTGACAACAGAATTTGGATAGCTGACTACAGAGTGTCAGtgttttaaataagcaaataaggCATAAAAATGAAGGTTGCTTTGCACAGTCAGTGTACGCTACACTTCATACAGGCACAAATTTGAGATCCGAAATCTGTCTTTTGCTGACAGAAGACCTACATAACGAATTCTGCTTTCTTTACATGGCACGTAACGACAGAATATCAGTTTATATTATACACTCTCAGATCAAGGAACACCTGGATTTGActaaatttgtttaataaataaatcaaaaatgaatTCCTTGACAATGTATTTGGTCGTTCAATGAATGTTTTCAATGTCACATGTTCCTAAACTGATGTGTGTGTATTGAAAgcaatgcaatctcatggcagtttgtaactttttgatcaagtggctaatttgtacagtCTTGTTTATGGAGTTTGAGGTCATGCCTTTGTGGCGAGGGGGTGGGGCTGAAAACAGAATGAGGAGACGTGGGGCTTACCACCATAGACAAAAGCCCAATTCTAATtcttttttgtacccctaccccttccccttggcccttaaaactgagtgggaagaggaagggcttcaaaatttacccctaagaattgggaacTGGgacactacagcacctgcacacgtaaTCATATGTCATTGCGATATCATGCTTCATATAAGAtcgacgatggcgactgctgtagttattccggttgtgttattattttggtatttatcttcaagaaatcactgaaggcatatattaagttatcataatgatatattgtggcaataagattgtggTATAATCATTCATACACAATTGTGTAgtgtaaatcagtggttctcaactggtttgaccatgggacccacatttttacatggtcatcaagccgcgacccaaaattttagaaactataatataattttaggaattataattaatttgtatttatttgttaacctACATATCTAGTGAAAGATAAAtgataagaaaatcaccaagacttacaaataaactatattttactgctctcatttaataaaatgtatcaaattatagaaatattacagagtaaaaacgacaaatactgtaaacagtggttagggaaAGGAAAAGTTTagttaccattaactaaactgaactgtttataaaacattaacactgatctggttgaactgaacagaaaccagcaaattaaagtaaaattattaaaatcatcataaccatttttataataatcaccagttGCTCTTCTGtttttgtgtgggctttcttggcctgtgcctgtacttgttttgaacaatGCTCTTTTGTAATGCTCTCAGCTATGGGAGTCTTCTTTGAAAATCATCCACAGGTTTGTTgttgcaactgggatgtttggtttctaaatgtcatttttatttagaaggtttcatgctctcttgtgagagcacctcactacatatgacacactgaggttttaagcctttttcgtcgtcaatatatgtaaatccacactttacatattcggggtcgtacttgcgctgaAATTTCATGTCAAACGGTACAGTTGTCGCacgtgcatttcaaaataaaagtcggatataagcaaaataagtttaaaattaaaatgtgttgttttttttgatcacacatcccgcgacccactgaaaatgttcccacgaCCCACCAGTTAAGAAACACTGTTGTAAATAGTACAAGTATGAGATTTGGGATGCACATGATGTTTTAATAGCACATCTAATATAGATTTTGGGAGGAAAGcagtatttagtttttaaatttagttctgttaatttatttattaaaattttgtcCAGCTATTTATGTGCACATCCGTTTCAGTGTAGCTATTTTTATCACCAGTACTAGGT

Function

GO:

id name namespace
GO:0061028 establishment of endothelial barrier biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030555 lncRNA upstream 307199 8814239 ~ 8825386 (+) True XLOC_015229
TCONS_00033241 lncRNA upstream 441556 8690658 ~ 8691029 (+) True XLOC_015227
TCONS_00033238 lncRNA upstream 644447 8485011 ~ 8488138 (+) False XLOC_015225
TCONS_00033480 lncRNA downstream 321507 9651716 ~ 9657047 (+) False XLOC_015236
TCONS_00033481 lncRNA downstream 321791 9652000 ~ 9657047 (+) False XLOC_015236
TCONS_00033483 lncRNA downstream 322144 9652353 ~ 9657047 (+) False XLOC_015236
TCONS_00033482 lncRNA downstream 322144 9652353 ~ 9657047 (+) False XLOC_015236
TCONS_00033485 lncRNA downstream 322173 9652382 ~ 9657047 (+) False XLOC_015236
TCONS_00030552 mRNA upstream 290113 8778490 ~ 8842472 (+) False XLOC_015229
TCONS_00030554 mRNA upstream 291689 8780443 ~ 8840896 (+) False XLOC_015229
TCONS_00030553 mRNA upstream 325683 8779164 ~ 8806902 (+) False XLOC_015229
TCONS_00030549 mRNA upstream 355089 8717155 ~ 8777496 (+) False XLOC_015228
TCONS_00030551 mRNA upstream 400763 8717172 ~ 8731822 (+) True XLOC_015228
TCONS_00030557 mRNA downstream 205812 9536021 ~ 9558915 (+) True XLOC_015233
TCONS_00030558 mRNA downstream 222247 9552456 ~ 9560307 (+) True XLOC_015234
TCONS_00030559 mRNA downstream 230531 9560740 ~ 9590850 (+) True XLOC_015235
TCONS_00030560 mRNA downstream 425213 9755422 ~ 9779959 (+) False XLOC_015237
TCONS_00030561 mRNA downstream 427244 9757453 ~ 9779523 (+) True XLOC_015237
TCONS_00030545 other upstream 943185 8189285 ~ 8189400 (+) True XLOC_015223
TCONS_00030543 other upstream 1085328 8045416 ~ 8047257 (+) True XLOC_015221
TCONS_00030536 other upstream 1408644 7723870 ~ 7723941 (+) True XLOC_015217
TCONS_00030535 other upstream 1409002 7723394 ~ 7723583 (+) True XLOC_015216
TCONS_00030534 other upstream 1411195 7721212 ~ 7721390 (+) True XLOC_015215
TCONS_00030568 other downstream 501129 9831338 ~ 9833806 (+) False XLOC_015238
TCONS_00030569 other downstream 507823 9838032 ~ 9841864 (+) False XLOC_015238
TCONS_00030571 other downstream 545320 9875529 ~ 9875645 (+) True XLOC_015239
TCONS_00030577 other downstream 643672 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030590 other downstream 875792 10206001 ~ 10206118 (+) True XLOC_015249

Expression Profile

Expression of TCONS_00033478 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.
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Expression of TCONS_00033478 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU12488 True 1095 lncRNA 0.43 2 CM030121.1 56129442 ~ 56130558 (-)
tiger barb (Puntius tetrazona) TU12488 True 2559 lncRNA 0.38 2 NC_056700.1 774259 ~ 776958 (-)