RNA id: TCONS_00033479


Basic Information

Item Value
RNA id TCONS_00033479
length 688
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id XLOC_015232
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9316319 ~ 9318279 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGTACTCTATTTTAATTGTGAACTGATTATACCCCAGAATACAGTAAACTATTATTAGTAATAGAAATCATATTATTGCAAAAGAACTTATGCCTAACCTTCTCAATCCAACAAATGGATTTGCAATGAAGAACAGACATTCTTTACAGACCACAAAACAGACATAACAGGTAGCAAGACTGAATTTTACGCACCAACAATGTGAAATTCTTTGAAGAACACAGGACACAGTGCTTTGCAAAGGTTTTCAGACTCTTTTAGTATCTGAGTTACAAatccaaatttaaataaaatgctttacatttttataaaaatacaaatggtATATTCAGTACGTTATAAAGCTATATGCAGGCAATGACAGCTGCAAAGCCGGCTCCATAAGTCTTTTGTGTGATATGCACAGTTCTACTGAGACGTAATTGTATTCTATTTTGCCCAGGCAGATTGATATTTCAGTGTAGTCATTGACTCTGCAGCACCAGATATCCACAGTTAGGCTGAGTTCAGGGATTTGACAGGGCAATTGTAGGAAAATCACCTCTTAGGACACTCCATAGCTAGAATAATCCATTCttactttagtttttttaacaATATGCCAAGTCCTTGCTTTTGAAAAGCAGCCCCACTACATGACtccccataatatatatatatatatacaccttatatatatattatat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

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Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030555 lncRNA upstream 490933 8814239 ~ 8825386 (+) True XLOC_015229
TCONS_00033241 lncRNA upstream 625290 8690658 ~ 8691029 (+) True XLOC_015227
TCONS_00033239 lncRNA upstream 828181 8485040 ~ 8488138 (+) False XLOC_015225
TCONS_00033480 lncRNA downstream 333437 9651716 ~ 9657047 (+) False XLOC_015236
TCONS_00033481 lncRNA downstream 333721 9652000 ~ 9657047 (+) False XLOC_015236
TCONS_00033483 lncRNA downstream 334074 9652353 ~ 9657047 (+) False XLOC_015236
TCONS_00033482 lncRNA downstream 334074 9652353 ~ 9657047 (+) False XLOC_015236
TCONS_00033485 lncRNA downstream 334103 9652382 ~ 9657047 (+) False XLOC_015236
TCONS_00030556 mRNA upstream 177822 9061885 ~ 9138497 (+) True XLOC_015230
TCONS_00030552 mRNA upstream 473847 8778490 ~ 8842472 (+) False XLOC_015229
TCONS_00030554 mRNA upstream 475423 8780443 ~ 8840896 (+) False XLOC_015229
TCONS_00030553 mRNA upstream 509417 8779164 ~ 8806902 (+) False XLOC_015229
TCONS_00030549 mRNA upstream 538823 8717155 ~ 8777496 (+) False XLOC_015228
TCONS_00030557 mRNA downstream 217742 9536021 ~ 9558915 (+) True XLOC_015233
TCONS_00030558 mRNA downstream 234177 9552456 ~ 9560307 (+) True XLOC_015234
TCONS_00030559 mRNA downstream 242461 9560740 ~ 9590850 (+) True XLOC_015235
TCONS_00030560 mRNA downstream 437143 9755422 ~ 9779959 (+) False XLOC_015237
TCONS_00030561 mRNA downstream 439174 9757453 ~ 9779523 (+) True XLOC_015237
TCONS_00030545 other upstream 1126919 8189285 ~ 8189400 (+) True XLOC_015223
TCONS_00030543 other upstream 1269062 8045416 ~ 8047257 (+) True XLOC_015221
TCONS_00030536 other upstream 1592378 7723870 ~ 7723941 (+) True XLOC_015217
TCONS_00030535 other upstream 1592736 7723394 ~ 7723583 (+) True XLOC_015216
TCONS_00030534 other upstream 1594929 7721212 ~ 7721390 (+) True XLOC_015215
TCONS_00030568 other downstream 513059 9831338 ~ 9833806 (+) False XLOC_015238
TCONS_00030569 other downstream 519753 9838032 ~ 9841864 (+) False XLOC_015238
TCONS_00030571 other downstream 557250 9875529 ~ 9875645 (+) True XLOC_015239
TCONS_00030577 other downstream 655602 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030590 other downstream 887722 10206001 ~ 10206118 (+) True XLOC_015249

Expression Profile

Expression of TCONS_00033479 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.
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Expression of TCONS_00033479 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU12330 True 3954 lncRNA 0.35 2 NC_056700.1 680687 ~ 782745 (+)
mexican tetra (Astyanax mexicanus) TU12330 True 1040 lncRNA 0.67 1 NC_035898.1 8594824 ~ 8595863 (+)