RNA id: TCONS_00033480


Basic Information

Item Value
RNA id TCONS_00033480
length 753
lncRNA type inter_gene
GC content 0.44
exon number 5
gene id XLOC_015236
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9651716 ~ 9657047 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGACCACTGAGCTGTAGTCTCATGACATCATCACCACACCTCAACTGTGGAGACATGGCTTCCCAGGCAGCTTCAGAAGAACTGTAGAGTTGACCTTTAATTGTGGATTTCTCCCGCAGGTCTCCCACAGAGTTTGGTGTTACAGTCACTGGACAGCTCTAATGCCAACTCTCAGATATCCATGGAGACCGTCAACACTGGCACTGGGTGAATACCTTCAGTGTACTGTTGCGGACAATCCAGGTGAATCTAAAATTCTTTCCTTCAGGTCCATGGTGTCAAGAAACTGCAGCAGATGGAGCAGGAGTATTTCCAGACAGTGGACTCTCACCAGATCTCTGTCCTGGGCTTCCAGGATGTCTAAGATACAATAGAGAGTCCCAGGAGAGGATGCACAGTTCTCAGCTCCAATTACAACAAGACACTCCGGTATGCTGTCAGTTCTGTGGTTCAAGAGCATGGCCTCCTTTAGATTTGGTTTTTGTAGAGTCGCAAGAGGACTTCTGCTGTGAGAACTACAGAGAGTTGTTTGAGATCATGGCCCatgaaaaacatctgaaaagttCTGAAGCAAGGTCTAGCAGACCTGCTCAACTGGATGACCCTTTCTTTGAGGAAGATGAAGATTTACAAGAGAAATCACAGGGAAATGGAAAGCTTAGGTTTGTGTTAAACTATATACTAGTTTTATaagttaaacaaatttaaataggaaataaaaaattttaatcagCAAGGCACATTGAACTTAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033478 lncRNA upstream 321507 9132585 ~ 9330209 (+) True XLOC_015231
TCONS_00033479 lncRNA upstream 333437 9316319 ~ 9318279 (+) True XLOC_015232
TCONS_00030555 lncRNA upstream 826330 8814239 ~ 8825386 (+) True XLOC_015229
TCONS_00033241 lncRNA upstream 960687 8690658 ~ 8691029 (+) True XLOC_015227
TCONS_00033239 lncRNA upstream 1163578 8485040 ~ 8488138 (+) False XLOC_015225
TCONS_00030570 lncRNA downstream 181024 9838071 ~ 9838649 (+) True XLOC_015238
TCONS_00033487 lncRNA downstream 627714 10284761 ~ 10285629 (+) True XLOC_015251
TCONS_00030592 lncRNA downstream 729432 10386479 ~ 10416272 (+) True XLOC_015252
TCONS_00033488 lncRNA downstream 906452 10563499 ~ 10564386 (+) True XLOC_015253
TCONS_00033489 lncRNA downstream 947466 10604513 ~ 10607329 (+) True XLOC_015254
TCONS_00030559 mRNA upstream 60866 9560740 ~ 9590850 (+) True XLOC_015235
TCONS_00030558 mRNA upstream 91409 9552456 ~ 9560307 (+) True XLOC_015234
TCONS_00030557 mRNA upstream 92801 9536021 ~ 9558915 (+) True XLOC_015233
TCONS_00030556 mRNA upstream 513219 9061885 ~ 9138497 (+) True XLOC_015230
TCONS_00030552 mRNA upstream 809244 8778490 ~ 8842472 (+) False XLOC_015229
TCONS_00030560 mRNA downstream 98375 9755422 ~ 9779959 (+) False XLOC_015237
TCONS_00030561 mRNA downstream 100406 9757453 ~ 9779523 (+) True XLOC_015237
TCONS_00030562 mRNA downstream 164710 9821757 ~ 9842240 (+) False XLOC_015238
TCONS_00030563 mRNA downstream 164723 9821770 ~ 9841522 (+) False XLOC_015238
TCONS_00030564 mRNA downstream 164735 9821782 ~ 9836238 (+) False XLOC_015238
TCONS_00030545 other upstream 1462316 8189285 ~ 8189400 (+) True XLOC_015223
TCONS_00030543 other upstream 1604459 8045416 ~ 8047257 (+) True XLOC_015221
TCONS_00030536 other upstream 1927775 7723870 ~ 7723941 (+) True XLOC_015217
TCONS_00030535 other upstream 1928133 7723394 ~ 7723583 (+) True XLOC_015216
TCONS_00030534 other upstream 1930326 7721212 ~ 7721390 (+) True XLOC_015215
TCONS_00030568 other downstream 174291 9831338 ~ 9833806 (+) False XLOC_015238
TCONS_00030569 other downstream 180985 9838032 ~ 9841864 (+) False XLOC_015238
TCONS_00030571 other downstream 218482 9875529 ~ 9875645 (+) True XLOC_015239
TCONS_00030577 other downstream 316834 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030590 other downstream 548954 10206001 ~ 10206118 (+) True XLOC_015249