Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00030568 |
| length | 458 |
| RNA type | processed_transcript |
| GC content | 0.43 |
| exon number | 3 |
| gene id | XLOC_015238 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 9821757 ~ 9842240 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0005544 | calcium-dependent phospholipid binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050522-310 | Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm. Is expressed in basal plate midbrain region and nervous system. |
| ensembl_id | ENSDART00000141472 |
9,829,000
9,830,000
9,831,000
9,832,000
9,833,000
9,834,000
9,835,000
9,836,000
9,837,000
NC_007113.7
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033480 | lncRNA | upstream | 174291 | 9651716 ~ 9657047 (+) | False | XLOC_015236 |
| TCONS_00033481 | lncRNA | upstream | 174291 | 9652000 ~ 9657047 (+) | False | XLOC_015236 |
| TCONS_00033483 | lncRNA | upstream | 174291 | 9652353 ~ 9657047 (+) | False | XLOC_015236 |
| TCONS_00033482 | lncRNA | upstream | 174291 | 9652353 ~ 9657047 (+) | False | XLOC_015236 |
| TCONS_00033485 | lncRNA | upstream | 174291 | 9652382 ~ 9657047 (+) | False | XLOC_015236 |
| TCONS_00030570 | lncRNA | downstream | 4265 | 9838071 ~ 9838649 (+) | True | XLOC_015238 |
| TCONS_00033487 | lncRNA | downstream | 450955 | 10284761 ~ 10285629 (+) | True | XLOC_015251 |
| TCONS_00030592 | lncRNA | downstream | 552673 | 10386479 ~ 10416272 (+) | True | XLOC_015252 |
| TCONS_00033488 | lncRNA | downstream | 729693 | 10563499 ~ 10564386 (+) | True | XLOC_015253 |
| TCONS_00033489 | lncRNA | downstream | 770707 | 10604513 ~ 10607329 (+) | True | XLOC_015254 |
| TCONS_00030560 | mRNA | upstream | 51379 | 9755422 ~ 9779959 (+) | False | XLOC_015237 |
| TCONS_00030561 | mRNA | upstream | 51815 | 9757453 ~ 9779523 (+) | True | XLOC_015237 |
| TCONS_00030559 | mRNA | upstream | 240488 | 9560740 ~ 9590850 (+) | True | XLOC_015235 |
| TCONS_00030558 | mRNA | upstream | 271031 | 9552456 ~ 9560307 (+) | True | XLOC_015234 |
| TCONS_00030557 | mRNA | upstream | 272423 | 9536021 ~ 9558915 (+) | True | XLOC_015233 |
| TCONS_00030572 | mRNA | downstream | 84872 | 9918678 ~ 9941230 (+) | False | XLOC_015240 |
| TCONS_00030573 | mRNA | downstream | 85129 | 9918935 ~ 9941405 (+) | True | XLOC_015240 |
| TCONS_00030574 | mRNA | downstream | 112315 | 9946121 ~ 9957805 (+) | True | XLOC_015241 |
| TCONS_00030575 | mRNA | downstream | 137136 | 9970942 ~ 9982960 (+) | False | XLOC_015242 |
| TCONS_00030576 | mRNA | downstream | 139881 | 9973687 ~ 9983661 (+) | False | XLOC_015242 |
| TCONS_00030545 | other | upstream | 1641938 | 8189285 ~ 8189400 (+) | True | XLOC_015223 |
| TCONS_00030543 | other | upstream | 1784081 | 8045416 ~ 8047257 (+) | True | XLOC_015221 |
| TCONS_00030536 | other | upstream | 2107397 | 7723870 ~ 7723941 (+) | True | XLOC_015217 |
| TCONS_00030535 | other | upstream | 2107755 | 7723394 ~ 7723583 (+) | True | XLOC_015216 |
| TCONS_00030534 | other | upstream | 2109948 | 7721212 ~ 7721390 (+) | True | XLOC_015215 |
| TCONS_00030569 | other | downstream | 4226 | 9838032 ~ 9841864 (+) | False | XLOC_015238 |
| TCONS_00030571 | other | downstream | 41723 | 9875529 ~ 9875645 (+) | True | XLOC_015239 |
| TCONS_00030577 | other | downstream | 140075 | 9973881 ~ 9982953 (+) | True | XLOC_015242 |
| TCONS_00030590 | other | downstream | 372195 | 10206001 ~ 10206118 (+) | True | XLOC_015249 |
| TCONS_00030605 | other | downstream | 1172851 | 11006657 ~ 11006790 (+) | True | XLOC_015261 |
