Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00030570 |
| length | 404 |
| lncRNA type | retained_intron |
| GC content | 0.44 |
| exon number | 2 |
| gene id | XLOC_015238 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 9821757 ~ 9842240 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0005544 | calcium-dependent phospholipid binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050522-310 | Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm. Is expressed in basal plate midbrain region and nervous system. |
| ensembl_id | ENSDART00000139639 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033480 | lncRNA | upstream | 181024 | 9651716 ~ 9657047 (+) | False | XLOC_015236 |
| TCONS_00033481 | lncRNA | upstream | 181024 | 9652000 ~ 9657047 (+) | False | XLOC_015236 |
| TCONS_00033483 | lncRNA | upstream | 181024 | 9652353 ~ 9657047 (+) | False | XLOC_015236 |
| TCONS_00033482 | lncRNA | upstream | 181024 | 9652353 ~ 9657047 (+) | False | XLOC_015236 |
| TCONS_00033485 | lncRNA | upstream | 181024 | 9652382 ~ 9657047 (+) | False | XLOC_015236 |
| TCONS_00033487 | lncRNA | downstream | 446112 | 10284761 ~ 10285629 (+) | True | XLOC_015251 |
| TCONS_00030592 | lncRNA | downstream | 547830 | 10386479 ~ 10416272 (+) | True | XLOC_015252 |
| TCONS_00033488 | lncRNA | downstream | 724850 | 10563499 ~ 10564386 (+) | True | XLOC_015253 |
| TCONS_00033489 | lncRNA | downstream | 765864 | 10604513 ~ 10607329 (+) | True | XLOC_015254 |
| TCONS_00030612 | lncRNA | downstream | 1216667 | 11055316 ~ 11063844 (+) | True | XLOC_015262 |
| TCONS_00030564 | mRNA | upstream | 1833 | 9821782 ~ 9836238 (+) | False | XLOC_015238 |
| TCONS_00030560 | mRNA | upstream | 58112 | 9755422 ~ 9779959 (+) | False | XLOC_015237 |
| TCONS_00030561 | mRNA | upstream | 58548 | 9757453 ~ 9779523 (+) | True | XLOC_015237 |
| TCONS_00030559 | mRNA | upstream | 247221 | 9560740 ~ 9590850 (+) | True | XLOC_015235 |
| TCONS_00030558 | mRNA | upstream | 277764 | 9552456 ~ 9560307 (+) | True | XLOC_015234 |
| TCONS_00030572 | mRNA | downstream | 80029 | 9918678 ~ 9941230 (+) | False | XLOC_015240 |
| TCONS_00030573 | mRNA | downstream | 80286 | 9918935 ~ 9941405 (+) | True | XLOC_015240 |
| TCONS_00030574 | mRNA | downstream | 107472 | 9946121 ~ 9957805 (+) | True | XLOC_015241 |
| TCONS_00030575 | mRNA | downstream | 132293 | 9970942 ~ 9982960 (+) | False | XLOC_015242 |
| TCONS_00030576 | mRNA | downstream | 135038 | 9973687 ~ 9983661 (+) | False | XLOC_015242 |
| TCONS_00030568 | other | upstream | 4265 | 9831338 ~ 9833806 (+) | False | XLOC_015238 |
| TCONS_00030545 | other | upstream | 1648671 | 8189285 ~ 8189400 (+) | True | XLOC_015223 |
| TCONS_00030543 | other | upstream | 1790814 | 8045416 ~ 8047257 (+) | True | XLOC_015221 |
| TCONS_00030536 | other | upstream | 2114130 | 7723870 ~ 7723941 (+) | True | XLOC_015217 |
| TCONS_00030535 | other | upstream | 2114488 | 7723394 ~ 7723583 (+) | True | XLOC_015216 |
| TCONS_00030571 | other | downstream | 36880 | 9875529 ~ 9875645 (+) | True | XLOC_015239 |
| TCONS_00030577 | other | downstream | 135232 | 9973881 ~ 9982953 (+) | True | XLOC_015242 |
| TCONS_00030590 | other | downstream | 367352 | 10206001 ~ 10206118 (+) | True | XLOC_015249 |
| TCONS_00030605 | other | downstream | 1168008 | 11006657 ~ 11006790 (+) | True | XLOC_015261 |
| TCONS_00030617 | other | downstream | 1405237 | 11243886 ~ 11244007 (+) | True | XLOC_015265 |
