RNA id: TCONS_00030571



Basic Information


Item Value
RNA id TCONS_00030571
length 117
RNA type rRNA
GC content 0.54
exon number 1
gene id XLOC_015239
representative True

Chromosome Information


Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9875529 ~ 9875645 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


acacacagccatatcaccctgcagcatAAGACCGGCtactcactgaagccaagcagggctgagcctggtcagtacctggatgggagaccactagggaatactaggttgctgttggaa

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000179465

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00030570 lncRNA upstream 36880 9838071 ~ 9838649 (+) True XLOC_015238
TCONS_00033483 lncRNA upstream 218482 9652353 ~ 9657047 (+) False XLOC_015236
TCONS_00033487 lncRNA downstream 409116 10284761 ~ 10285629 (+) True XLOC_015251
TCONS_00030592 lncRNA downstream 510834 10386479 ~ 10416272 (+) True XLOC_015252
TCONS_00033488 lncRNA downstream 687854 10563499 ~ 10564386 (+) True XLOC_015253
TCONS_00033489 lncRNA downstream 728868 10604513 ~ 10607329 (+) True XLOC_015254
TCONS_00030612 lncRNA downstream 1179671 11055316 ~ 11063844 (+) True XLOC_015262
TCONS_00030562 mRNA upstream 33289 9821757 ~ 9842240 (+) False XLOC_015238
TCONS_00030565 mRNA upstream 33887 9821790 ~ 9841642 (+) False XLOC_015238
TCONS_00030563 mRNA upstream 34007 9821770 ~ 9841522 (+) False XLOC_015238
TCONS_00030566 mRNA upstream 36816 9822319 ~ 9838713 (+) False XLOC_015238
TCONS_00030567 mRNA upstream 36816 9822337 ~ 9838713 (+) False XLOC_015238
TCONS_00030572 mRNA downstream 43033 9918678 ~ 9941230 (+) False XLOC_015240
TCONS_00030573 mRNA downstream 43290 9918935 ~ 9941405 (+) True XLOC_015240
TCONS_00030574 mRNA downstream 70476 9946121 ~ 9957805 (+) True XLOC_015241
TCONS_00030575 mRNA downstream 95297 9970942 ~ 9982960 (+) False XLOC_015242
TCONS_00030576 mRNA downstream 98042 9973687 ~ 9983661 (+) False XLOC_015242
TCONS_00030569 other upstream 33665 9838032 ~ 9841864 (+) False XLOC_015238
TCONS_00030568 other upstream 41723 9831338 ~ 9833806 (+) False XLOC_015238
TCONS_00030545 other upstream 1686129 8189285 ~ 8189400 (+) True XLOC_015223
TCONS_00030543 other upstream 1828272 8045416 ~ 8047257 (+) True XLOC_015221
TCONS_00030536 other upstream 2151588 7723870 ~ 7723941 (+) True XLOC_015217
TCONS_00030577 other downstream 98236 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030590 other downstream 330356 10206001 ~ 10206118 (+) True XLOC_015249
TCONS_00030605 other downstream 1131012 11006657 ~ 11006790 (+) True XLOC_015261
TCONS_00030617 other downstream 1368241 11243886 ~ 11244007 (+) True XLOC_015265
TCONS_00030621 other downstream 1881279 11756924 ~ 11764998 (+) False XLOC_015269

Expression Profile


Expression of TCONS_00030571 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.
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Expression of TCONS_00030571 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.