Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00030574 |
| length | 6943 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 4 |
| gene id | XLOC_015241 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 9946121 ~ 9957805 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | biological_process |
| GO:0005575 | cellular_component | cellular_component |
| GO:0004518 | nuclease activity | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| id | description |
|---|---|
| ko03016 | Transfer RNA biogenesis |
| id | description |
|---|---|
| ZDB-GENE-041008-211 | Predicted to enable nuclease activity and nucleic acid binding activity. Predicted to act upstream of or within mRNA processing and tRNA splicing, via endonucleolytic cleavage and ligation. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human TSEN15 (tRNA splicing endonuclease subunit 15). |
| ensembl_id | ENSDART00000100696 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00030570 | lncRNA | upstream | 107472 | 9838071 ~ 9838649 (+) | True | XLOC_015238 |
| TCONS_00033482 | lncRNA | upstream | 289074 | 9652353 ~ 9657047 (+) | False | XLOC_015236 |
| TCONS_00033487 | lncRNA | downstream | 326956 | 10284761 ~ 10285629 (+) | True | XLOC_015251 |
| TCONS_00030592 | lncRNA | downstream | 428674 | 10386479 ~ 10416272 (+) | True | XLOC_015252 |
| TCONS_00033488 | lncRNA | downstream | 605694 | 10563499 ~ 10564386 (+) | True | XLOC_015253 |
| TCONS_00033489 | lncRNA | downstream | 646708 | 10604513 ~ 10607329 (+) | True | XLOC_015254 |
| TCONS_00030612 | lncRNA | downstream | 1097511 | 11055316 ~ 11063844 (+) | True | XLOC_015262 |
| TCONS_00030573 | mRNA | upstream | 4716 | 9918935 ~ 9941405 (+) | True | XLOC_015240 |
| TCONS_00030572 | mRNA | upstream | 4891 | 9918678 ~ 9941230 (+) | False | XLOC_015240 |
| TCONS_00030562 | mRNA | upstream | 103881 | 9821757 ~ 9842240 (+) | False | XLOC_015238 |
| TCONS_00030565 | mRNA | upstream | 104479 | 9821790 ~ 9841642 (+) | False | XLOC_015238 |
| TCONS_00030563 | mRNA | upstream | 104599 | 9821770 ~ 9841522 (+) | False | XLOC_015238 |
| TCONS_00030575 | mRNA | downstream | 13137 | 9970942 ~ 9982960 (+) | False | XLOC_015242 |
| TCONS_00030576 | mRNA | downstream | 15882 | 9973687 ~ 9983661 (+) | False | XLOC_015242 |
| TCONS_00030578 | mRNA | downstream | 32686 | 9990491 ~ 10040264 (+) | False | XLOC_015243 |
| TCONS_00030579 | mRNA | downstream | 49034 | 10006839 ~ 10039790 (+) | False | XLOC_015243 |
| TCONS_00030580 | mRNA | downstream | 49308 | 10007113 ~ 10028424 (+) | True | XLOC_015243 |
| TCONS_00030571 | other | upstream | 70476 | 9875529 ~ 9875645 (+) | True | XLOC_015239 |
| TCONS_00030569 | other | upstream | 104257 | 9838032 ~ 9841864 (+) | False | XLOC_015238 |
| TCONS_00030568 | other | upstream | 112315 | 9831338 ~ 9833806 (+) | False | XLOC_015238 |
| TCONS_00030545 | other | upstream | 1756721 | 8189285 ~ 8189400 (+) | True | XLOC_015223 |
| TCONS_00030543 | other | upstream | 1898864 | 8045416 ~ 8047257 (+) | True | XLOC_015221 |
| TCONS_00030577 | other | downstream | 16076 | 9973881 ~ 9982953 (+) | True | XLOC_015242 |
| TCONS_00030590 | other | downstream | 248196 | 10206001 ~ 10206118 (+) | True | XLOC_015249 |
| TCONS_00030605 | other | downstream | 1048852 | 11006657 ~ 11006790 (+) | True | XLOC_015261 |
| TCONS_00030617 | other | downstream | 1286081 | 11243886 ~ 11244007 (+) | True | XLOC_015265 |
| TCONS_00030621 | other | downstream | 1799119 | 11756924 ~ 11764998 (+) | False | XLOC_015269 |
