Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00030576 |
| length | 1667 |
| RNA type | mRNA |
| GC content | 0.39 |
| exon number | 5 |
| gene id | XLOC_015242 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 9970942 ~ 9983661 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | biological_process |
| GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | biological_process |
| GO:0048280 | vesicle fusion with Golgi apparatus | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0015031 | protein transport | biological_process |
| GO:0033116 | endoplasmic reticulum-Golgi intermediate compartment membrane | cellular_component |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0005793 | endoplasmic reticulum-Golgi intermediate compartment | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0042470 | melanosome | cellular_component |
| GO:0000139 | Golgi membrane | cellular_component |
| GO:0012507 | ER to Golgi transport vesicle membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0031201 | SNARE complex | cellular_component |
| GO:0005484 | SNAP receptor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-010724-3 | Predicted to enable SNAP receptor activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum; and vesicle fusion with Golgi apparatus. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in several cellular components, including Golgi apparatus; endoplasmic reticulum-Golgi intermediate compartment membrane; and melanosome. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in bounding membrane of organelle; endoplasmic reticulum membrane; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in hatching gland; notochord; and polster. Orthologous to human SEC22B (SEC22 homolog B, vesicle trafficking protein). |
| ensembl_id | ENSDART00000043499 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00030570 | lncRNA | upstream | 135038 | 9838071 ~ 9838649 (+) | True | XLOC_015238 |
| TCONS_00033482 | lncRNA | upstream | 316640 | 9652353 ~ 9657047 (+) | False | XLOC_015236 |
| TCONS_00033487 | lncRNA | downstream | 301100 | 10284761 ~ 10285629 (+) | True | XLOC_015251 |
| TCONS_00030592 | lncRNA | downstream | 402818 | 10386479 ~ 10416272 (+) | True | XLOC_015252 |
| TCONS_00033488 | lncRNA | downstream | 579838 | 10563499 ~ 10564386 (+) | True | XLOC_015253 |
| TCONS_00033489 | lncRNA | downstream | 620852 | 10604513 ~ 10607329 (+) | True | XLOC_015254 |
| TCONS_00030612 | lncRNA | downstream | 1071655 | 11055316 ~ 11063844 (+) | True | XLOC_015262 |
| TCONS_00030574 | mRNA | upstream | 15882 | 9946121 ~ 9957805 (+) | True | XLOC_015241 |
| TCONS_00030573 | mRNA | upstream | 32282 | 9918935 ~ 9941405 (+) | True | XLOC_015240 |
| TCONS_00030572 | mRNA | upstream | 32457 | 9918678 ~ 9941230 (+) | False | XLOC_015240 |
| TCONS_00030566 | mRNA | upstream | 134974 | 9822319 ~ 9838713 (+) | False | XLOC_015238 |
| TCONS_00030578 | mRNA | downstream | 6830 | 9990491 ~ 10040264 (+) | False | XLOC_015243 |
| TCONS_00030579 | mRNA | downstream | 23178 | 10006839 ~ 10039790 (+) | False | XLOC_015243 |
| TCONS_00030580 | mRNA | downstream | 23452 | 10007113 ~ 10028424 (+) | True | XLOC_015243 |
| TCONS_00030581 | mRNA | downstream | 80086 | 10063747 ~ 10076225 (+) | False | XLOC_015244 |
| TCONS_00030582 | mRNA | downstream | 80104 | 10063765 ~ 10076929 (+) | False | XLOC_015244 |
| TCONS_00030571 | other | upstream | 98042 | 9875529 ~ 9875645 (+) | True | XLOC_015239 |
| TCONS_00030569 | other | upstream | 131823 | 9838032 ~ 9841864 (+) | False | XLOC_015238 |
| TCONS_00030568 | other | upstream | 139881 | 9831338 ~ 9833806 (+) | False | XLOC_015238 |
| TCONS_00030545 | other | upstream | 1784287 | 8189285 ~ 8189400 (+) | True | XLOC_015223 |
| TCONS_00030543 | other | upstream | 1926430 | 8045416 ~ 8047257 (+) | True | XLOC_015221 |
| TCONS_00030590 | other | downstream | 222340 | 10206001 ~ 10206118 (+) | True | XLOC_015249 |
| TCONS_00030605 | other | downstream | 1022996 | 11006657 ~ 11006790 (+) | True | XLOC_015261 |
| TCONS_00030617 | other | downstream | 1260225 | 11243886 ~ 11244007 (+) | True | XLOC_015265 |
| TCONS_00030621 | other | downstream | 1773263 | 11756924 ~ 11764998 (+) | False | XLOC_015269 |
| TCONS_00030632 | other | downstream | 2393161 | 12376822 ~ 12378603 (+) | False | XLOC_015273 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000004_01859136_01861721.mRNA | True | 2620 | mRNA | 0.42 | 5 | CI01000004 | 1859131 ~ 1863688 (-) |
