RNA id: TCONS_00030580


Basic Information

Item Value
RNA id TCONS_00030580
length 804
RNA type mRNA
GC content 0.48
exon number 5
gene id XLOC_015243
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9990491 ~ 10040264 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTAGCAACTTTTCGAGCAGGTATTTAGCTACTTTACGTGGAAGGCTTTTGGAAACGTTGCAAAGACAGCAATGGCACCGATAAAATGAGTTTAACTGGGACTAAACAGGGGCACTCGTCCCTGTCCTCTGTCTCTGGCTCAGCAGAGGCCTCCAGTATCTCCACCTCATCCCGACTGAAGTATGCCTCTCTGGGGGTGCTGGTGTTCCAGACCACCTCCTTGGTGCTGACAATGCGTTATTCCCGTACCTTGCACACAGAAGAACCCCTCTACTTGGCATCATCTGCTGTGGTGTGTGCTGAACTTCTTAAGATTGTTGCTTGCATTCTGCTTGTCTTCAGAGATCACAGTTTCAGTGTTCGTTCACTGAATCTGGTGTTGAAGGAGGAAATAATCAACAGACCTCTGTTAACTCTGAAGCTGGCAATTCCCTCAGGAATCTACACCCTGCAAAACAACCTTCTCTACGTGGCTCTGTCAAACCTAGACGCAGCTACTTACCAGGTCACGTATCAGCTGAAAATTCTCACTACAGCGCTGTTCTCTGTGTCCATGCTGGGCAAAAGACTTGGCATTTACCAGTGGCTTTCACTAGTCATTCTAATGTTTGGCATTGCTCTTGTCCAGTGGCCAACTGAAGTCTCATCGAGCACCGGTGAAAAAGATTTGACCGCCAGTTCTCAGCTGATTGGACTGCTGGCTGTGCTTGTGGCCTGCTTCTCCAGTGGATTCGCtggtgtttattttgaaaagatCCTCAAAGAGAGCAAGCAGAGTGTCTGGGTCCGCAATATTCAGCTAGGT

Function

GO:

id name namespace
GO:0090481 pyrimidine nucleotide-sugar transmembrane transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0030173 integral component of Golgi membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity molecular_function
GO:0005459 UDP-galactose transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-460 Predicted to enable UDP-galactose transmembrane transporter activity. Predicted to act upstream of or within carbohydrate transport and pyrimidine nucleotide-sugar transmembrane transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Is expressed in axis. Orthologous to human SLC35A3 (solute carrier family 35 member A3).

Ensembl:

ensembl_id ENSDART00000155213

JBrowse2

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Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030570 lncRNA upstream 168464 9838071 ~ 9838649 (+) True XLOC_015238
TCONS_00033482 lncRNA upstream 350066 9652353 ~ 9657047 (+) False XLOC_015236
TCONS_00033487 lncRNA downstream 256337 10284761 ~ 10285629 (+) True XLOC_015251
TCONS_00030592 lncRNA downstream 358055 10386479 ~ 10416272 (+) True XLOC_015252
TCONS_00033488 lncRNA downstream 535075 10563499 ~ 10564386 (+) True XLOC_015253
TCONS_00033489 lncRNA downstream 576089 10604513 ~ 10607329 (+) True XLOC_015254
TCONS_00030612 lncRNA downstream 1026892 11055316 ~ 11063844 (+) True XLOC_015262
TCONS_00030576 mRNA upstream 23452 9973687 ~ 9983661 (+) False XLOC_015242
TCONS_00030575 mRNA upstream 24153 9970942 ~ 9982960 (+) False XLOC_015242
TCONS_00030574 mRNA upstream 49308 9946121 ~ 9957805 (+) True XLOC_015241
TCONS_00030573 mRNA upstream 65708 9918935 ~ 9941405 (+) True XLOC_015240
TCONS_00030572 mRNA upstream 65883 9918678 ~ 9941230 (+) False XLOC_015240
TCONS_00030581 mRNA downstream 35323 10063747 ~ 10076225 (+) False XLOC_015244
TCONS_00030582 mRNA downstream 35341 10063765 ~ 10076929 (+) False XLOC_015244
TCONS_00030583 mRNA downstream 35368 10063792 ~ 10076225 (+) True XLOC_015244
TCONS_00030584 mRNA downstream 99338 10127762 ~ 10129061 (+) True XLOC_015245
TCONS_00030585 mRNA downstream 105921 10134345 ~ 10141741 (+) True XLOC_015246
TCONS_00030577 other upstream 24160 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030571 other upstream 131468 9875529 ~ 9875645 (+) True XLOC_015239
TCONS_00030569 other upstream 165249 9838032 ~ 9841864 (+) False XLOC_015238
TCONS_00030568 other upstream 173307 9831338 ~ 9833806 (+) False XLOC_015238
TCONS_00030545 other upstream 1817713 8189285 ~ 8189400 (+) True XLOC_015223
TCONS_00030590 other downstream 177577 10206001 ~ 10206118 (+) True XLOC_015249
TCONS_00030605 other downstream 978233 11006657 ~ 11006790 (+) True XLOC_015261
TCONS_00030617 other downstream 1215462 11243886 ~ 11244007 (+) True XLOC_015265
TCONS_00030621 other downstream 1728500 11756924 ~ 11764998 (+) False XLOC_015269
TCONS_00030632 other downstream 2348398 12376822 ~ 12378603 (+) False XLOC_015273

Expression Profile

Expression of TCONS_00030580 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.
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Expression of TCONS_00030580 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.