RNA id: TCONS_00030582


Basic Information

Item Value
RNA id TCONS_00030582
length 1596
RNA type mRNA
GC content 0.45
exon number 6
gene id XLOC_015244
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10063747 ~ 10076929 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATTGGCTGGTACGTATACGGCGGAAGTGGAATCGGCCCCGGCGCACTTCCCTGACACGCATCAACCGGTCATTCAACCAGCTCCCTAGCCGACTCCCAGGGGTCGATGGTCATTCATTGAGTCAAACTATCGCTTATCAGAACGGTTTATGATTGTGGGTTTGCTTCACAGGCTGTCGGAAAAGCTTCCACGCGTTTTGCACAGGTTGAGAGTGATAATGAAGCCGCAAGTTGTGTTTGTTTTGGGCGGGCCTGGCGCGGGGAAAGGAACACAATGCGCGAGAATTGTGGAGAACTACAGTTACACTCACCTGTCCGCTGGAGATCTCCTGAGAGAGGAGCGCAGCCGCACCGACTCAGAGTTTGGCCAGCTTATTGACAGCTACATCAAAGAAGGGAAGATAGTTCCTGTTCAAATCACCATCAACTTACTGAGGAAGGCAATGGAAGAGACTATGAAAGCTGATGAGAAGAAGTTCCGCTTTCTTATCGATGGTTTCCCACGTAACCAAGACAACCTGCAGGGCTGGAATACTGAGATGGATGGGAAGGCAGATGTCAAGTTTGTTCTTTTCTTTGACTGCAGCAATGAGGTATGCATTGACAGATGTTTAGAGCGGGGAAAGAGCAGCGGTCGCACTGATGATAACAGAGAAAGTTTAGAGAAAAGGATCCAGACGTACCTGCAGTCCACACGGCCCATTATAGAGCTGTACGAGAAGCAAGGAAAAGTGCAAAGGATTGATGCCTCCCGATCTGTGGATGAGGTGTTTGCAGATGTCAAGAACATTCTGGAGAAAGACGACTAAACTTCAACAAACCAAAATCCTTGAAAAGGAAGGCGTCTGTTCACTCGTCGGCAGTGCTATGCCTTCTACATGTAtcaatttacacatttttactcATGCGACAGTGAAATAGGGTTTTTTAGACGTAAGAGTGTGTGCTCATATCCGTGTTTGTAAGTCTGAAAGGAAAACGCTTTGTTGTTGAGCAAACAGTGCATATTTGCTCAGCATTACACTGAAGAGGAACAAATATTTCAGCAGAGAACTAGGCAAGCTTGAGCAATAACATTCGAGGCACTTGTACAGAAACACATTATGCTGATATTTCATTATCACACGCGAGAGATGTTTAGAAACGCATCAAGCCCTGCGTTTTGATTGGTTTCTGCACTTAAGTAGTGAGCAATTCTACGTGACCAACAGATTCCCAGgcctttttttcttaaatgttgtATCTGCTCATGTTTTTCCTCACTGTTTTCCATAGTAATCCACAGCAGGCTCTGAGGACCTATTGCTGGCCGCTCAACAACAGAGAAGTGTTTTAGCTGTATGATTGTTGTTTTATCGTATTTTGCGTGCTAGATTCCAAACACGTGTCATCTTTGCTCAGGCAGTTGATTTTACGATGTGGGAACAGGGGctcatgcttttatttttggtTGTCTCGGCATCCTTGGGGTTGTTTGTGAATGAACCGAATTTGTCGTATTGATGTGACGATTCAGTCTGTGTTCAGACTGTGTCCACAAATAACATAAGAAATATCAAGGATGACAGAAAAATAAACGTTCTGATTTGGAATGTC

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process biological_process
GO:0006221 pyrimidine nucleotide biosynthetic process biological_process
GO:0006225 UDP biosynthetic process biological_process
GO:0046705 CDP biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0009041 uridylate kinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0033862 UMP kinase activity molecular_function
GO:0004127 cytidylate kinase activity molecular_function
GO:0019205 nucleobase-containing compound kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2113 Predicted to enable UMP kinase activity; cytidylate kinase activity; and nucleoside diphosphate kinase activity. Predicted to be involved in nucleoside phosphate metabolic process. Predicted to act upstream of or within 'de novo' pyrimidine nucleobase biosynthetic process; phosphorylation; and pyrimidine nucleotide biosynthetic process. Predicted to be active in cytoplasm and nucleus. Is expressed in neural plate and notochord. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Orthologous to human CMPK1 (cytidine/uridine monophosphate kinase 1).

Ensembl:

ensembl_id ENSDART00000014088

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030570 lncRNA upstream 225116 9838071 ~ 9838649 (+) True XLOC_015238
TCONS_00033482 lncRNA upstream 406718 9652353 ~ 9657047 (+) False XLOC_015236
TCONS_00033487 lncRNA downstream 207832 10284761 ~ 10285629 (+) True XLOC_015251
TCONS_00030592 lncRNA downstream 309550 10386479 ~ 10416272 (+) True XLOC_015252
TCONS_00033488 lncRNA downstream 486570 10563499 ~ 10564386 (+) True XLOC_015253
TCONS_00033489 lncRNA downstream 527584 10604513 ~ 10607329 (+) True XLOC_015254
TCONS_00030612 lncRNA downstream 978387 11055316 ~ 11063844 (+) True XLOC_015262
TCONS_00030578 mRNA upstream 23501 9990491 ~ 10040264 (+) False XLOC_015243
TCONS_00030579 mRNA upstream 23975 10006839 ~ 10039790 (+) False XLOC_015243
TCONS_00030580 mRNA upstream 35341 10007113 ~ 10028424 (+) True XLOC_015243
TCONS_00030576 mRNA upstream 80104 9973687 ~ 9983661 (+) False XLOC_015242
TCONS_00030575 mRNA upstream 80805 9970942 ~ 9982960 (+) False XLOC_015242
TCONS_00030584 mRNA downstream 50833 10127762 ~ 10129061 (+) True XLOC_015245
TCONS_00030585 mRNA downstream 57416 10134345 ~ 10141741 (+) True XLOC_015246
TCONS_00030586 mRNA downstream 70100 10147029 ~ 10151455 (+) False XLOC_015247
TCONS_00030587 mRNA downstream 70174 10147103 ~ 10151839 (+) False XLOC_015247
TCONS_00030588 mRNA downstream 70194 10147123 ~ 10150150 (+) True XLOC_015247
TCONS_00030577 other upstream 80812 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030571 other upstream 188120 9875529 ~ 9875645 (+) True XLOC_015239
TCONS_00030569 other upstream 221901 9838032 ~ 9841864 (+) False XLOC_015238
TCONS_00030568 other upstream 229959 9831338 ~ 9833806 (+) False XLOC_015238
TCONS_00030545 other upstream 1874365 8189285 ~ 8189400 (+) True XLOC_015223
TCONS_00030590 other downstream 129072 10206001 ~ 10206118 (+) True XLOC_015249
TCONS_00030605 other downstream 929728 11006657 ~ 11006790 (+) True XLOC_015261
TCONS_00030617 other downstream 1166957 11243886 ~ 11244007 (+) True XLOC_015265
TCONS_00030621 other downstream 1679995 11756924 ~ 11764998 (+) False XLOC_015269
TCONS_00030632 other downstream 2299893 12376822 ~ 12378603 (+) False XLOC_015273

Expression Profile

Expression of TCONS_00030582 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.
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Expression of TCONS_00030582 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_01814534_01821755.mRNA True 1389 mRNA 0.41 6 CI01000004 1813782 ~ 1821755 (-)