RNA id: TCONS_00030585


Basic Information

Item Value
RNA id TCONS_00030585
length 1488
RNA type mRNA
GC content 0.44
exon number 7
gene id XLOC_015246
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10134345 ~ 10141741 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTCAAATTGCACAGTTGCATTTACTTTGGCACTCAAAGAGGTTCACTGGTGTCATTTACATAACAGACATCAGAGTGTCTTTACATTGACCATTTAGTCATGACTGAAGTAcagcacacatatatatatattcaacaaaCAAAGCTTCATTCACTTCATTCTGTACATTCGCTTCAGGAGTACAGGTTCTTGCTGTTCAGCATGCAACTTTGGGCTACAGTTTCTGTTCTTGGGCTCCTGATAACGGGTTCCTGGGCGCAGGGGGTACAGACCACCGTCAACTTGGCTGAATGTGATTCTCCAGAGGCTGAAGCAGCAGCTCTTGCAGCACAAGATTACCTCAACGCTCAGCACACCCATGGTTACAAATACATCCTGAATCGTATTGAGGGCAACAAGGTCATCAGCAGGCCCAATCATGAAGACACGTATCTTATGGAGTTGGATTTTCTGGAAACTACGTGTCACGTCTTGGATCCAACACCAGTGAGCTTGTGCCCAGTCAGACAACAGCGCAGTACGGCAGTTGAGGCAGATTGTGATTTTGCTGTGACTAAAGGCCTGTCAATTGTGGCATTCAAGTGTAAAACTGAGATTGaaacaGACGATGATTGTCTAGGCTGTCCTCACCTCCTGCCTTTAAATGACACAGATGGACTGCAACTCATTGAAGCCTCTTTAGATAGTTTTAATCAAAACAACACACTAAAGACAAAGTTTGCACTCTTTGAAATTGGACGAATGACATCTCAGATTGTCAGTGGAGTGCCTCAGTACTTTGCAGAATATGCCATTATTGGGACAAACTGCTCAAGTTATGTTGATGATTCATGCATCCCTCAGAATCACACTGTTGCTatCCATGGCCTATGTCTAGCTGAAGGTTCAGCCGGTCTGATTGATGTTGACTGCAAAATCTTCAACCCTACCCAAACTGTGCACACAGAAAGCAACAATGCCACAATGCGAGTCCAGCAACTACTGCACGCCCACACTTTTGGACCTCAGCACAACCCCACCGTTCATGGCCTCAGACATCACAAGCTGACAGCACTCCATGACCCTGCACAAAGTGGTTTGATCTCTGCAGAATCCACTGAATCAGCAGAGGTAGTAGCTGTGCTGCCACAGGAAGCCCATGTTGTAAAGCGTGAGGTCGCTGCCCCAGAAAAGCCAGCTGTAGAtgcaaaagtagaaaaaacacccATTCTTGTAGACCCGATTGCTCTCAGCTGTCCaggaaaaaagaaacatttcTAATTTGGTCTAATATCATGAAACCACAAACATAGATGTATAGGCCTGAATATAGTTGACCGATGAGTTCCGAGATCAGCTATCAAACTCATGACCATAGCTGGTAAGCAGTAAGTGTTTTATGACAAAGTAGCTACATGTATAAACAACACTGGCCGGCCATATTTAGGAAGCAGTTATGGCTTTGCCTATTGTATTCCATGGTGCTGTAATAAAATGCTTACCTTGA

Function

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004866 endopeptidase inhibitor activity molecular_function
GO:0004869 cysteine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1133 Predicted to enable endopeptidase inhibitor activity. Predicted to be involved in negative regulation of endopeptidase activity. Predicted to be located in extracellular space and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular region. Human ortholog(s) of this gene implicated in alopecia-mental retardation syndrome 1; coronary artery disease; and type 2 diabetes mellitus. Orthologous to human AHSG (alpha 2-HS glycoprotein).

Ensembl:

ensembl_id ENSDART00000100725

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030570 lncRNA upstream 295696 9838071 ~ 9838649 (+) True XLOC_015238
TCONS_00033482 lncRNA upstream 477298 9652353 ~ 9657047 (+) False XLOC_015236
TCONS_00033487 lncRNA downstream 143020 10284761 ~ 10285629 (+) True XLOC_015251
TCONS_00030592 lncRNA downstream 244738 10386479 ~ 10416272 (+) True XLOC_015252
TCONS_00033488 lncRNA downstream 421758 10563499 ~ 10564386 (+) True XLOC_015253
TCONS_00033489 lncRNA downstream 462772 10604513 ~ 10607329 (+) True XLOC_015254
TCONS_00030612 lncRNA downstream 913575 11055316 ~ 11063844 (+) True XLOC_015262
TCONS_00030584 mRNA upstream 5284 10127762 ~ 10129061 (+) True XLOC_015245
TCONS_00030582 mRNA upstream 57416 10063765 ~ 10076929 (+) False XLOC_015244
TCONS_00030581 mRNA upstream 58120 10063747 ~ 10076225 (+) False XLOC_015244
TCONS_00030583 mRNA upstream 58120 10063792 ~ 10076225 (+) True XLOC_015244
TCONS_00030578 mRNA upstream 94081 9990491 ~ 10040264 (+) False XLOC_015243
TCONS_00030586 mRNA downstream 5288 10147029 ~ 10151455 (+) False XLOC_015247
TCONS_00030587 mRNA downstream 5362 10147103 ~ 10151839 (+) False XLOC_015247
TCONS_00030588 mRNA downstream 5382 10147123 ~ 10150150 (+) True XLOC_015247
TCONS_00030589 mRNA downstream 18743 10160484 ~ 10169433 (+) True XLOC_015248
TCONS_00030591 mRNA downstream 138904 10280645 ~ 10284572 (+) True XLOC_015250
TCONS_00030577 other upstream 151392 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030571 other upstream 258700 9875529 ~ 9875645 (+) True XLOC_015239
TCONS_00030569 other upstream 292481 9838032 ~ 9841864 (+) False XLOC_015238
TCONS_00030568 other upstream 300539 9831338 ~ 9833806 (+) False XLOC_015238
TCONS_00030545 other upstream 1944945 8189285 ~ 8189400 (+) True XLOC_015223
TCONS_00030590 other downstream 64260 10206001 ~ 10206118 (+) True XLOC_015249
TCONS_00030605 other downstream 864916 11006657 ~ 11006790 (+) True XLOC_015261
TCONS_00030617 other downstream 1102145 11243886 ~ 11244007 (+) True XLOC_015265
TCONS_00030621 other downstream 1615183 11756924 ~ 11764998 (+) False XLOC_015269
TCONS_00030632 other downstream 2235081 12376822 ~ 12378603 (+) False XLOC_015273

Expression Profile

Expression of TCONS_00030585 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.
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Expression of TCONS_00030585 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_02014703_02018248.mRNA True 1320 mRNA 0.45 6 CI01000004 2014600 ~ 2018466 (+)