RNA id: TCONS_00030587


Basic Information

Item Value
RNA id TCONS_00030587
length 2749
RNA type mRNA
GC content 0.38
exon number 3
gene id XLOC_015247
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10147029 ~ 10151839 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTTTCTTTCCTGCCCGAGCTGAGATTTCATACAAGCAAACGAGCCGGACACCGGAGGAGACGCCAAAATCCTTCGTCCACACGACCTTTGCTAGACCTTTAGCACTTGTAGCGCTAAATCCACTCCAGTCGGTGTAATACGTCctatcatttcaaataaaaaaaatgtcttggCAAAGCTACGTGGATAACCTGATGGCTGATGGCAGCTGCCAGGATGCCGCCATTGTTGGATACACTGACGCCAAATATGTCTGGGCATCGTCAGAGGGTGGTACGTTTAGCGGTATAACGcctGATGAAATTGATGTCATTGTTGGTAAAGACAGAGAGGGCTTTTTCACCAGTGGACTGACTCTAGGCAAGAAGAAGTGCTCTGTGATCAGAGACAGCCTTCAGGTGGAGGGAGACTGGACAATGGACATCAGGACAAAGAGCCATAATGGAGAGCCGACATACAATGTTTCCATAGGCAGAGCTGGCAAAGTCTTGGTTCTTGTAATGGGCAAAGAAGGGGTCCATGGAGGCGGACTGAATAAGAAGGCATACTCAATGGCAAAATACTTGAGGGATTCGGGGTTCTAATGTAATTAAGCTTGTTTAGTTTCACTTGAGGGACAGAAAGAAGAAAGAAGTTTGCTGTTAAGCTTTCTCCTTCAAGCAGttaatgtcttgaaaaaaattaatagcaaTCAATGGAAGAATGATGATAATTTCTTATGTCCCCGTGTCATCGGGGgggaaagactttttttttttttttcagttttgttcatttgtcgtttttttttctttccttatGTACTCCAGTGTTGGTTTTAGTGATGGGAAAGGAAGGTACCCATGGAGGATCGCTCAACAAGCAAGCATATAGCATGGCTGATTACCTGAGGAAAGTTGGATACTAAAGCATCCCCTTCTCATCCACACAGCAGCTCACTTTAAAACACTACAACACACTACAAACCCAGTCATCTTCCCCTAGCCTCTTCCTTGCCCCCTTTAGTCAACATGACAACACTACCAGAAACAGTTAGTAGATTTATTGTTGTCTCTATCAGAGTCTGTTAATTTCttgaaggctttttttttttttgttgttgttgttgtatgctcattgttctctaattttctgagttttgacatgttttttgtgCCACAGTAAATCAAGCATGTTGGTTTTATGAAGGTTCATGACAAACACTAATGTACATACAATAGGTGtaaaatgaagaattaaaaaaaacttggaCGACCCAGAATTTGTGTAGGTTCACAAGTCCATGAAGTGACTATATTGTCCAATTTTTTTTCCTTAGGCACTGCTAATGATCCAGCTTAAGATAGATTGATGCCTCTCAAGTGCTTTGAGTCCTTGCTGAGCTCTTATGGTCTTCCTTGTATACAGCATGTCCAGGATGGAAAAAGTGCATGCATATCTTTTAGGTCAATATCATCATTTCCAGTAACATTACCACCTTGTCTCAGCTTTGAAAATGAAGTTAGCCAATCAAATAACACTTTCTTATTGTTTTTACTCTGTTCTTGGTTTGACCCTGAGCTAATTTGATAAGCACCTTCAGCCCCTAACCCTGTGAACTGCTTTGCCCTTGCCCCAGCTACTTACACACTACCTTTTAAATTTGAACACCTTCCATAAAATGCTTTTGCTGTTGTATTTGGATGTGGTCTTGTAAGTCATTGGTCTAATGTTGGAATATTTTGAGTATGGTGGCAGATCAGCATTTACAAGGTTTGGGTTGAGTTGTTTCCCAAGAGCCTTCGCATCCCGGACTCTTTATGGACATTCCATCGCTAACAACAGCTCAGGCACTTAATAATTGTTGTTTGCcagtttcttttgtttgtttgtttctctcaAGAAGTGTTGCCATCCCAATGTTCAGTCCATTTCACTTTGGGTTCTCCAATAggaccaatgtttttttttttttttgttttttgcatccaAAGGGATTAACAGAATTGCTCCAAACTGTTGTTGTAAAGGAGGATGACTGCTAGTTTCATCTGTTTTTGACTTTATAAAACAATTTTCAACACCTATACAAATACACAATGTAATCCTAAGCTCATTTCTATTAAACACTATTGCTAAGTTcactgactttaaaaaaaaagtatataataacTACCTGAACATTATTCATGAATGTCTTGAATCGATGAAATGGCAGTCTTATTGTTAATATCATCACAAATTTCTTAAACCCTTTTTACTTTTAATCTGTTATTttcaaaaaagaaataatttgGAAGTCATTGCCTTGTAAACTAAATTGCGATGTATCAAACTGTCCTAGCACGGTACAAATGCTTCattaaatagacaaaaaaattaaatcgtGTACACTAACTTTTTGGGATTTGGTGGTATTAGTTGGAAAAGACCACTAGTCTAAGTCAGTTGTATTGTGGAAACTTGTTAAATAAAGCTGTGTATCCTGTGCCATAATGTAGATCTGATCTGTTGCTACTGTGAGATGGGTTTTAATCGCTGCCGTGTAAGGAGTCAAACCTTCAGTGGCTTCTCTGAGGTTATAAAGTCATACTCCAGGGCTTTTGGAAAATGTACAGATTAAAGAAACATTAATTCATGTCTGGTTTTCTCAGTTTTTAAATTTGCCCAACTGATATTCAGCTCCATTTGCGTGGAATGAGAAATAATGTCATGGTTAAACCCCCTTGTTTACAGACAGATCAAATAAACTTATTCCAATCAGAAAA

Function

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0032233 positive regulation of actin filament bundle assembly biological_process
GO:0005737 cytoplasm cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-34 Predicted to enable actin binding activity. Predicted to be involved in positive regulation of actin filament bundle assembly and regulation of actin filament polymerization. Predicted to act upstream of or within actin cytoskeleton organization. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDART00000053426

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030570 lncRNA upstream 308454 9838071 ~ 9838649 (+) True XLOC_015238
TCONS_00033482 lncRNA upstream 490056 9652353 ~ 9657047 (+) False XLOC_015236
TCONS_00033487 lncRNA downstream 132922 10284761 ~ 10285629 (+) True XLOC_015251
TCONS_00030592 lncRNA downstream 234640 10386479 ~ 10416272 (+) True XLOC_015252
TCONS_00033488 lncRNA downstream 411660 10563499 ~ 10564386 (+) True XLOC_015253
TCONS_00033489 lncRNA downstream 452674 10604513 ~ 10607329 (+) True XLOC_015254
TCONS_00030612 lncRNA downstream 903477 11055316 ~ 11063844 (+) True XLOC_015262
TCONS_00030585 mRNA upstream 5362 10134345 ~ 10141741 (+) True XLOC_015246
TCONS_00030584 mRNA upstream 18042 10127762 ~ 10129061 (+) True XLOC_015245
TCONS_00030582 mRNA upstream 70174 10063765 ~ 10076929 (+) False XLOC_015244
TCONS_00030581 mRNA upstream 70878 10063747 ~ 10076225 (+) False XLOC_015244
TCONS_00030589 mRNA downstream 8645 10160484 ~ 10169433 (+) True XLOC_015248
TCONS_00030591 mRNA downstream 128806 10280645 ~ 10284572 (+) True XLOC_015250
TCONS_00030593 mRNA downstream 490208 10642047 ~ 10687230 (+) True XLOC_015255
TCONS_00030595 mRNA downstream 557718 10709557 ~ 10760516 (+) False XLOC_015256
TCONS_00030594 mRNA downstream 557718 10709557 ~ 10760516 (+) False XLOC_015256
TCONS_00030577 other upstream 164150 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030571 other upstream 271458 9875529 ~ 9875645 (+) True XLOC_015239
TCONS_00030569 other upstream 305239 9838032 ~ 9841864 (+) False XLOC_015238
TCONS_00030568 other upstream 313297 9831338 ~ 9833806 (+) False XLOC_015238
TCONS_00030545 other upstream 1957703 8189285 ~ 8189400 (+) True XLOC_015223
TCONS_00030590 other downstream 54162 10206001 ~ 10206118 (+) True XLOC_015249
TCONS_00030605 other downstream 854818 11006657 ~ 11006790 (+) True XLOC_015261
TCONS_00030617 other downstream 1092047 11243886 ~ 11244007 (+) True XLOC_015265
TCONS_00030621 other downstream 1605085 11756924 ~ 11764998 (+) False XLOC_015269
TCONS_00030632 other downstream 2224983 12376822 ~ 12378603 (+) False XLOC_015273

Expression Profile

Expression of TCONS_00030587 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.
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Expression of TCONS_00030587 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU28532 True 2233 lncRNA 0.34 2 CI01000004 1978730 ~ 2027792 (+)
rainbow trout (Oncorhynchus mykiss) TU817704 True 2615 TUCP 0.39 3 NC_048572.1 51252355 ~ 51259019 (-)
bowfin (Amia calva) TU28532 True 203 lncRNA 0.39 2 CM030123.1 11570952 ~ 11573862 (+)