RNA id: TCONS_00030590



Basic Information


Item Value
RNA id TCONS_00030590
length 118
RNA type rRNA
GC content 0.50
exon number 1
gene id XLOC_015249
representative True

Chromosome Information


Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10206001 ~ 10206118 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ggccacagccatatccctctgcagcccaagactggttactcactgaagccaagcagggctaagcctggtcagtacttgAATGGGAGACCAACATGGAAAAACTAGATTgatgttggaa

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000120253

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00030570 lncRNA upstream 367352 9838071 ~ 9838649 (+) True XLOC_015238
TCONS_00033482 lncRNA upstream 548954 9652353 ~ 9657047 (+) False XLOC_015236
TCONS_00033487 lncRNA downstream 78643 10284761 ~ 10285629 (+) True XLOC_015251
TCONS_00030592 lncRNA downstream 180361 10386479 ~ 10416272 (+) True XLOC_015252
TCONS_00033488 lncRNA downstream 357381 10563499 ~ 10564386 (+) True XLOC_015253
TCONS_00033489 lncRNA downstream 398395 10604513 ~ 10607329 (+) True XLOC_015254
TCONS_00030612 lncRNA downstream 849198 11055316 ~ 11063844 (+) True XLOC_015262
TCONS_00030589 mRNA upstream 36568 10160484 ~ 10169433 (+) True XLOC_015248
TCONS_00030587 mRNA upstream 54162 10147103 ~ 10151839 (+) False XLOC_015247
TCONS_00030586 mRNA upstream 54546 10147029 ~ 10151455 (+) False XLOC_015247
TCONS_00030588 mRNA upstream 55851 10147123 ~ 10150150 (+) True XLOC_015247
TCONS_00030585 mRNA upstream 64260 10134345 ~ 10141741 (+) True XLOC_015246
TCONS_00030591 mRNA downstream 74527 10280645 ~ 10284572 (+) True XLOC_015250
TCONS_00030593 mRNA downstream 435929 10642047 ~ 10687230 (+) True XLOC_015255
TCONS_00030595 mRNA downstream 503439 10709557 ~ 10760516 (+) False XLOC_015256
TCONS_00030594 mRNA downstream 503439 10709557 ~ 10760516 (+) False XLOC_015256
TCONS_00030596 mRNA downstream 503592 10709710 ~ 10735727 (+) True XLOC_015256
TCONS_00030577 other upstream 223048 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030571 other upstream 330356 9875529 ~ 9875645 (+) True XLOC_015239
TCONS_00030569 other upstream 364137 9838032 ~ 9841864 (+) False XLOC_015238
TCONS_00030568 other upstream 372195 9831338 ~ 9833806 (+) False XLOC_015238
TCONS_00030545 other upstream 2016601 8189285 ~ 8189400 (+) True XLOC_015223
TCONS_00030605 other downstream 800539 11006657 ~ 11006790 (+) True XLOC_015261
TCONS_00030617 other downstream 1037768 11243886 ~ 11244007 (+) True XLOC_015265
TCONS_00030621 other downstream 1550806 11756924 ~ 11764998 (+) False XLOC_015269
TCONS_00030632 other downstream 2170704 12376822 ~ 12378603 (+) False XLOC_015273
TCONS_00030633 other downstream 2188505 12394623 ~ 12394983 (+) False XLOC_015273

Expression Profile


Expression of TCONS_00030590 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.
//

Expression of TCONS_00030590 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.