RNA id: TCONS_00030591


Basic Information

Item Value
RNA id TCONS_00030591
length 1253
RNA type mRNA
GC content 0.42
exon number 4
gene id XLOC_015250
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10280645 ~ 10284572 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

taatgtaaCGCCTCGCAAAGTCATATTTAGCCGGTGACAGCCAGAGAAAGAACACCAACGAGAACTCTTGTGGATTTATCCAGGTCTCAAAGGAAAGTTATTCAAGTCCGTTCTGGATTTTACATGCAACATGACTTTTGAAGAACTTAACGGAGATTATTCTATTGAAAGGATGAACTCGGTGATTAAGGCTCTGGAGGAGGTCCTGCGCTCCGCATTACCGCAGGGATGTATTACAGTCGGGGTTTACGAGGCTGCAAAGTCCCTCAATGTGGACCCTGATAACGTGGTGCTGTGCATCCTGGCCACTGACGACGACGATGTGAAAGATGTGGCGCTTCAGATTCACTTCACTCTCATCCAGGCTTTCTGCTGCGAGAACGACATCAACATCCTGCGCGTGAACAACACGCGGCGCCTCGCGAACATCCTCGGGGGCGCAGGCATGCACGGGAGCGAGCAGATGGACTTGCACTGCATTCTGGTCACGGTTCCACATGCGTCCACATGGAAGAACCCGGCTCTGGGAAAAGTGAACCGCTTCTGCAGAGAGAGCCGCTGTATGGATCAGTGGGTGCCCATTATCAACCTTCCAGAGCGATGAGCAGAACTGAAACCCAAAATCGGGTGAAAAAACAACACGAAtcaaaaaatatctagcaaaaaaagataaaagctAAAAAAGGTGGTCACAAAAAGGACTGAGAGTTCAGACCGGACGGAAGCTCCTTCAGAATACcctggagaaggaggaggaggagctctCTCTTGCAATGATTCAGCAGTTTTTGGCTTTGTTTGTGGGACTTTCTGAGGACGTCACATGAAGCTAATTGTGAATGGAAGTGAGCACCTGAGTATCTTGTGACAGTTTATTGACGGAGTGTCATAAAGCACTTCAGATAATGACAGGATAGCAGATTTCTCAGTGGACTGTTTTCCAAAGGGGGCTTCCCTTGTTTGTAGATTTGCCATCAATTCTGAATAATATATCAGCAGTACTTGTTTATGAATGTTGCAAATGAAATGATTTTAAAGGGACTTGCTTCATAACCACTGAGATCAAAACTATGCATTCATGATATCCtgtaccatttattattatttcttattttacataattgttttttgtggtctttaaattattttattatattaatttaaatgagtatTTATGTACGACTTTTTATACTATTATATATTGAACTGTGAAATGAGTTTTGtgttgtaataaaaaatacatttaaactcaa

Function

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0000185 activation of MAPKKK activity biological_process
GO:0048339 paraxial mesoderm development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1501 Acts upstream of or within paraxial mesoderm development. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including endoderm; eye; intestine; otic placode; and solid lens vesicle. Orthologous to human GADD45A (growth arrest and DNA damage inducible alpha).

Ensembl:

ensembl_id ENSDART00000063996

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030570 lncRNA upstream 441996 9838071 ~ 9838649 (+) True XLOC_015238
TCONS_00033482 lncRNA upstream 623598 9652353 ~ 9657047 (+) False XLOC_015236
TCONS_00033487 lncRNA downstream 189 10284761 ~ 10285629 (+) True XLOC_015251
TCONS_00030592 lncRNA downstream 101907 10386479 ~ 10416272 (+) True XLOC_015252
TCONS_00033488 lncRNA downstream 278927 10563499 ~ 10564386 (+) True XLOC_015253
TCONS_00033489 lncRNA downstream 319941 10604513 ~ 10607329 (+) True XLOC_015254
TCONS_00030612 lncRNA downstream 770744 11055316 ~ 11063844 (+) True XLOC_015262
TCONS_00030589 mRNA upstream 111212 10160484 ~ 10169433 (+) True XLOC_015248
TCONS_00030587 mRNA upstream 128806 10147103 ~ 10151839 (+) False XLOC_015247
TCONS_00030586 mRNA upstream 129190 10147029 ~ 10151455 (+) False XLOC_015247
TCONS_00030588 mRNA upstream 130495 10147123 ~ 10150150 (+) True XLOC_015247
TCONS_00030585 mRNA upstream 138904 10134345 ~ 10141741 (+) True XLOC_015246
TCONS_00030593 mRNA downstream 357475 10642047 ~ 10687230 (+) True XLOC_015255
TCONS_00030595 mRNA downstream 424985 10709557 ~ 10760516 (+) False XLOC_015256
TCONS_00030594 mRNA downstream 424985 10709557 ~ 10760516 (+) False XLOC_015256
TCONS_00030596 mRNA downstream 425138 10709710 ~ 10735727 (+) True XLOC_015256
TCONS_00030597 mRNA downstream 482172 10766744 ~ 10785649 (+) False XLOC_015257
TCONS_00030590 other upstream 74527 10206001 ~ 10206118 (+) True XLOC_015249
TCONS_00030577 other upstream 297692 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030571 other upstream 405000 9875529 ~ 9875645 (+) True XLOC_015239
TCONS_00030569 other upstream 438781 9838032 ~ 9841864 (+) False XLOC_015238
TCONS_00030568 other upstream 446839 9831338 ~ 9833806 (+) False XLOC_015238
TCONS_00030605 other downstream 722085 11006657 ~ 11006790 (+) True XLOC_015261
TCONS_00030617 other downstream 959314 11243886 ~ 11244007 (+) True XLOC_015265
TCONS_00030621 other downstream 1472352 11756924 ~ 11764998 (+) False XLOC_015269
TCONS_00030632 other downstream 2092250 12376822 ~ 12378603 (+) False XLOC_015273
TCONS_00030633 other downstream 2110051 12394623 ~ 12394983 (+) False XLOC_015273

Expression Profile

Expression of TCONS_00030591 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.
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Expression of TCONS_00030591 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_03433963_03436906.mRNA True 843 mRNA 0.46 5 CI01000004 3433832 ~ 3436906 (-)