RNA id: TCONS_00033487



Basic Information


Item Value
RNA id TCONS_00033487
length 419
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id XLOC_015251
representative True

Chromosome Information


Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10284761 ~ 10285629 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CTGAAATGAATGGCTCGGGCTCAGCTTACTGTACCGCTTTTGCGTGCGTCAAGGTCAAACATGCTGCTGTAAATCAGAATTGCTCTTAATTGTGCTGAACTGATACGGCTTTGTAGGTTAAAAGTCAGCGTGTAGAAAGCACATTGCGCAAAGCCAGCTGGGAACGGAAGTGCTTGGAGACGCCTCTCTGAAAGGTGCGGTTTTTATCACATGGCTGGCACACATTGGGTTGGAGTTTTAGGTGCCACATACCAGTAAATCTGTTGCGAAAGCCACCACTTCTCTGTACAGAGGTGATGACGCAAGGGAGATTTGGCTGATGTTTGGGCCGTGCAATGCAGctccacaggtcccaaaaccaagcaagccagtggtgacagtgaaGAGGAACAAAATTTCACCaactgacaaaagtgaag

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00030570 lncRNA upstream 446112 9838071 ~ 9838649 (+) True XLOC_015238
TCONS_00033483 lncRNA upstream 627714 9652353 ~ 9657047 (+) False XLOC_015236
TCONS_00030592 lncRNA downstream 100850 10386479 ~ 10416272 (+) True XLOC_015252
TCONS_00033488 lncRNA downstream 277870 10563499 ~ 10564386 (+) True XLOC_015253
TCONS_00033489 lncRNA downstream 318884 10604513 ~ 10607329 (+) True XLOC_015254
TCONS_00030612 lncRNA downstream 769687 11055316 ~ 11063844 (+) True XLOC_015262
TCONS_00030616 lncRNA downstream 922834 11208463 ~ 11209682 (+) True XLOC_015264
TCONS_00030591 mRNA upstream 189 10280645 ~ 10284572 (+) True XLOC_015250
TCONS_00030589 mRNA upstream 115328 10160484 ~ 10169433 (+) True XLOC_015248
TCONS_00030587 mRNA upstream 132922 10147103 ~ 10151839 (+) False XLOC_015247
TCONS_00030586 mRNA upstream 133306 10147029 ~ 10151455 (+) False XLOC_015247
TCONS_00030588 mRNA upstream 134611 10147123 ~ 10150150 (+) True XLOC_015247
TCONS_00030593 mRNA downstream 356418 10642047 ~ 10687230 (+) True XLOC_015255
TCONS_00030595 mRNA downstream 423928 10709557 ~ 10760516 (+) False XLOC_015256
TCONS_00030594 mRNA downstream 423928 10709557 ~ 10760516 (+) False XLOC_015256
TCONS_00030596 mRNA downstream 424081 10709710 ~ 10735727 (+) True XLOC_015256
TCONS_00030597 mRNA downstream 481115 10766744 ~ 10785649 (+) False XLOC_015257
TCONS_00030590 other upstream 78643 10206001 ~ 10206118 (+) True XLOC_015249
TCONS_00030577 other upstream 301808 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030571 other upstream 409116 9875529 ~ 9875645 (+) True XLOC_015239
TCONS_00030569 other upstream 442897 9838032 ~ 9841864 (+) False XLOC_015238
TCONS_00030568 other upstream 450955 9831338 ~ 9833806 (+) False XLOC_015238
TCONS_00030605 other downstream 721028 11006657 ~ 11006790 (+) True XLOC_015261
TCONS_00030617 other downstream 958257 11243886 ~ 11244007 (+) True XLOC_015265
TCONS_00030621 other downstream 1471295 11756924 ~ 11764998 (+) False XLOC_015269
TCONS_00030632 other downstream 2091193 12376822 ~ 12378603 (+) False XLOC_015273
TCONS_00030633 other downstream 2108994 12394623 ~ 12394983 (+) False XLOC_015273

Expression Profile


Expression of TCONS_00033487 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.
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Expression of TCONS_00033487 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.