RNA id: TCONS_00033488


Basic Information

Item Value
RNA id TCONS_00033488
length 888
lncRNA type antisense_over
GC content 0.36
exon number 1
gene id XLOC_015253
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10563499 ~ 10564386 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGTTGATTTCTCAAGGTGACAACATCCTCTACCAAACCCCTGCTGTCTCTCAACATTGGTGACAGTTATGAAGACACCTGGGAATAAAAGGTTAACTAAGCGAATGTATAACATTAACACTGGTGTTTAAATGTACTTGGTGTAAAAACAACACGAACATGATAATTTGTAGAAACATTAAACACTCGCTTAAATTAAGAGTTAACGTTATATTAAAGTATAGTCGTATCAAGTGCTGTCTATGTATggttattattataagttattatcATACCTGCCTGACGCTCGTTTCATTTGATGCATTCAACAGGTTGTCAAGGAACAGATGGACACTCTTGGGTCATTTTCAACTCTCCGCTACTTTTTGCTGGGATAATTCACAAAAATAGCTCTATACCAGTAAATCGATGCGTACCAGCATGTTCTAATGGAAGGTTTTGACctaaaaaacactttatttccaCCGTTAGCTTAGCATTCGCTGCAGTGAAATCTAAACAATACGCGCTGCCGTCGTCACGGAAGCTGATTGGCTGAGACAAAAAACCGTCCCTTAACAGTCGTGACGCAATCTTGACGCGCTTGTAGCGCCGCGAATGACAGCGCGAAGATCACAAAGGGAACAAACATGTTTGTGATATTCCGTAACACTATGTGAATCTTACAatattctctcttttttataATAGATGACTGTATTGTATGTGATCTTGTAAACATCACTGTGAccttgctttaaatttaaagtgctttttgtaatttatattccCCCTGGCATATTATTtagtttgtcattttgttttgttctgttctctaCTCTTGTTGTTAAAGGTTTTGTaccttttctgtatatttttgtattcttgttgaacgctttaataaaaaaa

Function

GO:

id name namespace
GO:0048468 cell development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0022612 gland morphogenesis biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0006935 chemotaxis biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0030182 neuron differentiation biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0048850 hypophysis morphogenesis biological_process
GO:0048852 diencephalon morphogenesis biological_process
GO:0048853 forebrain morphogenesis biological_process
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0033504 floor plate development biological_process
GO:0033505 floor plate morphogenesis biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0071679 commissural neuron axon guidance biological_process
GO:0040011 locomotion biological_process
GO:0097485 neuron projection guidance biological_process
GO:0061564 axon development biological_process
GO:0048666 neuron development biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0021983 pituitary gland development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0042330 taxis biological_process
GO:0007418 ventral midline development biological_process
GO:0022008 neurogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:0048699 generation of neurons biological_process
GO:0031175 neuron projection development biological_process
GO:0021508 floor plate formation biological_process
GO:0016043 cellular component organization biological_process
GO:0021510 spinal cord development biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

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Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030592 lncRNA upstream 147227 10386479 ~ 10416272 (+) True XLOC_015252
TCONS_00033487 lncRNA upstream 277870 10284761 ~ 10285629 (+) True XLOC_015251
TCONS_00030570 lncRNA upstream 724850 9838071 ~ 9838649 (+) True XLOC_015238
TCONS_00033485 lncRNA upstream 906452 9652382 ~ 9657047 (+) False XLOC_015236
TCONS_00033489 lncRNA downstream 40127 10604513 ~ 10607329 (+) True XLOC_015254
TCONS_00030612 lncRNA downstream 490930 11055316 ~ 11063844 (+) True XLOC_015262
TCONS_00030616 lncRNA downstream 644077 11208463 ~ 11209682 (+) True XLOC_015264
TCONS_00033490 lncRNA downstream 1064616 11629002 ~ 11633323 (+) False XLOC_015266
TCONS_00033491 lncRNA downstream 1064625 11629011 ~ 11633323 (+) False XLOC_015266
TCONS_00030591 mRNA upstream 278927 10280645 ~ 10284572 (+) True XLOC_015250
TCONS_00030589 mRNA upstream 394066 10160484 ~ 10169433 (+) True XLOC_015248
TCONS_00030587 mRNA upstream 411660 10147103 ~ 10151839 (+) False XLOC_015247
TCONS_00030586 mRNA upstream 412044 10147029 ~ 10151455 (+) False XLOC_015247
TCONS_00030593 mRNA downstream 77661 10642047 ~ 10687230 (+) True XLOC_015255
TCONS_00030595 mRNA downstream 145171 10709557 ~ 10760516 (+) False XLOC_015256
TCONS_00030594 mRNA downstream 145171 10709557 ~ 10760516 (+) False XLOC_015256
TCONS_00030596 mRNA downstream 145324 10709710 ~ 10735727 (+) True XLOC_015256
TCONS_00030597 mRNA downstream 202358 10766744 ~ 10785649 (+) False XLOC_015257
TCONS_00030590 other upstream 357381 10206001 ~ 10206118 (+) True XLOC_015249
TCONS_00030577 other upstream 580546 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030571 other upstream 687854 9875529 ~ 9875645 (+) True XLOC_015239
TCONS_00030569 other upstream 721635 9838032 ~ 9841864 (+) False XLOC_015238
TCONS_00030568 other upstream 729693 9831338 ~ 9833806 (+) False XLOC_015238
TCONS_00030605 other downstream 442271 11006657 ~ 11006790 (+) True XLOC_015261
TCONS_00030617 other downstream 679500 11243886 ~ 11244007 (+) True XLOC_015265
TCONS_00030621 other downstream 1192538 11756924 ~ 11764998 (+) False XLOC_015269
TCONS_00030632 other downstream 1812436 12376822 ~ 12378603 (+) False XLOC_015273
TCONS_00030633 other downstream 1830237 12394623 ~ 12394983 (+) False XLOC_015273

Expression Profile

Expression of TCONS_00033488 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
End of interactive chart.
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Expression of TCONS_00033488 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
End of interactive chart.