RNA id: TCONS_00030593


Basic Information

Item Value
RNA id TCONS_00030593
length 3113
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_015255
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10642047 ~ 10687230 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGAAAAAAAGCACTCCTTTAGGCAGAAATAGTGTACGCCTGCGCTCTTGACACGCCGCTGTCTCGCTGCTTTTAAACAGCTGCTCTTGAAAGTGTTAGCCGCTGGATGTCAACCAAGGCGACTCGAATGACATGAATTTCTGAAATAACATGCACATTTCCACGGTGGCCGTCGGGAAGTCGGATATCTGTGAGAGGATCTCGGCTTGTCCGCGTCATGTGTAGCGCGAGCCCAATGACTTGAAGTTCGCCGGGCATTATTTCATTTCATTCGGTATATGGAGACTCTGCTCTGGATCGCGCACAGGCTTTGAGATGATCCATTTCTGCGATGGCGAGGGGTCTGTTTTCACGGGCCTGGCTGTCAAAGACGCACCATTTTCAGGCTCGCCTGTCCTATATTCGAGTGAAGTATCTCTTTCTCACGTGGCTTGCTGTGTTTGTGAGCAGTTGGGTTGTTTATGTCCAGTACTCCACGTACACTGAGCTGTGCAGAGGACGAGAATGCAAGAGCATCATTTGTGACAAATACAGCAAAGGCATTATCGATGGTTCAGCCTGCAGCAGCCTGTGTGAAGAAAGCAAACTGTACTTTGGAAGGTGCCTCTCCACCAAACCAAACAATCAGGTGTATACGGGCAGCTGGGGTGACCAGGACGGTGTCATCAAGTGTCAACTAAGTGACGTCCTGCACTATGAGCTGGGGGAAGAGCTGGAGCCAAAGAAAGAGATCACACTCTTCGAAAAGCCCACCCGAGGAACATCTGTAGAGAAGTTCAAAGAAATGGTCGCAAGTCATTTGAAGGCAAAAGTTGGAGAGCAAGCTAACCTGTCCAATTTGGTTAGCCTAATTCTTTCAGTGGCCGACAGCAACAAAGATGGCCACATCTCTCTCCCGGAGGCCAAGTCTGCCTGGGCTTTATTACAGCTCAACGAAGTTCTGCTGGCGGTGGTGCTCCAGGGCCGAGAGCACACACCTAAACTGCTGGGCTTCTGCGGGGACCTGTACGTGGTGGAGCGGGTTCCTCATGCTCCGCTGTTTGGTATCACCTTGCCCTGGCCTATGGATCTGTGGATCCCCGCGGGAATGCGGCGAAGCATGGACCAGTGGTTCACACCGTCCTGGCCCCGCAAGGCCAAAATCTTCATCGGCTTGCTGGAACTTATTGAAGACATCTTCCATGGTACCTTTGGGAGCTTCTTAATGTGCGACATGAGAGCCAGTTCGTTTGGCTACACCGACCGCCACGACCTCAGGCTAGTGGATGGCCGGCGTGTAGTAGCCGAGGAGGCCTTCAAACAGGCCATGATCCTCCAGCGCTGTAAGGACCACGAGGACTGTGTGTACGGTGCGGACTGTAGGACTTCATGCGACCTTTCAGAACAGCGTTGCACAGCCGAGGTGGCTCAGCCCAATCTGGCGCGAGCCTGCGGAGCAATGAAGGATTACCTCCTACGAGGAGCTCCGTTCCATCTGCAGGAAGAGCTAGAGAAGCAACTGTACGCCTGCATGGCTCTCAAGGGTTCGGCTGAGCAGATGGAAATGGAGCACTCACTCATCCTCAATAACCTCAAGACCCTGCTGTGGAAACAGATCTCACACACCACCGACTCCTGAAGAGAAGCCAGGGTGGTCAGGGGTGACCAAACTTGGTCcagaagggccggtgtcctgcaaatattatttacaaccccaatcagactcacctgggctagctaatcaagctcttactaggttttctagaaacatccttgcaggtgtgttgaggcaagttggagctgaagTTTGCAGAACACCgctcctccaggaccaagtttgggcacccctgatttagattcTTGAATGTCTTCTGAAGCACTTGAGGCCATTTTCAAGATGGCTGCTGGAAGGTAAAGTTGCCAGAAATAAAGGTTTTCTTTCTTGATTAGGGGGGGAAACGTCAAATTGTGAGGAATTATTTCTCAGGCTCAACGTTGAAGTTCACGTTTCCGTTTCATGCTTTGTCGTCATACACAAGTGATCGATGATCATGTTTATTCTACACTTCCTTCAGATGTTATGAAGGAGCAAGTAATGCTAACTTTGCATCCGTTGTTGGATGCTAGCGTAGAAAGTGAAGGAATGCACTCACCACTGAGTGTGGTTGTGTAAGTCTCGTATTGTAACGTTTGTCACACATGAGCACAGCAAAAAGAGCCATAAAAGAGCCATTGTGAAATGGAAATACTAATGCCTTGATATGCATGTTGCCAGTGAGTGTGTTATTTTGAGTTCGATGCTTGTGTGTACTTCTCTTGGGTCAATTCTCGGAAATGATCAAGCCGACCACTTATGATCTGATggtagcttaaaaaaaaaaaggttcaattTGTTGACAGTATTAGTTATTGCAATAGCtatcagcatttattaatataggAGAATGTAAACTAATGCGTTTTAATAGTTTGAAACGTCAGTTGtgccaaacctgtttgagcttcATTATTCTGTCTAACACAAAATAATTCAAAGTACAATTTCAAATTCATGCATTGTTTCCTACCATGAATGTAAACTGCGACAAttacaaacattcttcaaaatattttcttttgtattcaacaaaaacaaactaaaatggctgttttttaccatttaatctaaattaaaaatgttgtaaTTAATAAGATGCGATGCCTATTGCATTAACCAGTGTAAAtcaaattaatcttttttttttttttgtgaaatgttgAAATGTTTACAGGAGTCTTGCGAGTAACACTACAACAATGAAGCCCTACTCAACCATGATAGTTCACAGAGTTGATCATTATTTATTTCTAATGTTATTTTAGTAATTTAGGCatgtctaataaataaataacatttagatTTCAAGCTAAAGCTGTATGAGATGTCTACCATCACATTATGATGTactaatgaatgaaggaattaagAGGTGCTTTGTTTGTTGATCAGCCATTTTCAATGGGATGTTTCAGATTGTTTGTCAAACTGCTTCAATTTTGTGTACTCATAAATCCCACTGCTGCTGACTTTAAATGGAGATTTTTATAAAAGTTGATTGCATGACTTTGCACATTAAAAGTGTTTCTCAAATCTA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-4286 Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human DIPK1A (divergent protein kinase domain 1A).

Ensembl:

ensembl_id ENSDART00000091570

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033489 lncRNA upstream 34718 10604513 ~ 10607329 (+) True XLOC_015254
TCONS_00033488 lncRNA upstream 77661 10563499 ~ 10564386 (+) True XLOC_015253
TCONS_00030592 lncRNA upstream 225775 10386479 ~ 10416272 (+) True XLOC_015252
TCONS_00033487 lncRNA upstream 356418 10284761 ~ 10285629 (+) True XLOC_015251
TCONS_00030570 lncRNA upstream 803398 9838071 ~ 9838649 (+) True XLOC_015238
TCONS_00030612 lncRNA downstream 368086 11055316 ~ 11063844 (+) True XLOC_015262
TCONS_00030616 lncRNA downstream 521233 11208463 ~ 11209682 (+) True XLOC_015264
TCONS_00033490 lncRNA downstream 941772 11629002 ~ 11633323 (+) False XLOC_015266
TCONS_00033491 lncRNA downstream 941781 11629011 ~ 11633323 (+) False XLOC_015266
TCONS_00033492 lncRNA downstream 941813 11629043 ~ 11633323 (+) True XLOC_015266
TCONS_00030591 mRNA upstream 357475 10280645 ~ 10284572 (+) True XLOC_015250
TCONS_00030589 mRNA upstream 472614 10160484 ~ 10169433 (+) True XLOC_015248
TCONS_00030587 mRNA upstream 490208 10147103 ~ 10151839 (+) False XLOC_015247
TCONS_00030586 mRNA upstream 490592 10147029 ~ 10151455 (+) False XLOC_015247
TCONS_00030588 mRNA upstream 491897 10147123 ~ 10150150 (+) True XLOC_015247
TCONS_00030595 mRNA downstream 22327 10709557 ~ 10760516 (+) False XLOC_015256
TCONS_00030594 mRNA downstream 22327 10709557 ~ 10760516 (+) False XLOC_015256
TCONS_00030596 mRNA downstream 22480 10709710 ~ 10735727 (+) True XLOC_015256
TCONS_00030597 mRNA downstream 79514 10766744 ~ 10785649 (+) False XLOC_015257
TCONS_00030598 mRNA downstream 84557 10771787 ~ 10785866 (+) True XLOC_015257
TCONS_00030590 other upstream 435929 10206001 ~ 10206118 (+) True XLOC_015249
TCONS_00030577 other upstream 659094 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030571 other upstream 766402 9875529 ~ 9875645 (+) True XLOC_015239
TCONS_00030569 other upstream 800183 9838032 ~ 9841864 (+) False XLOC_015238
TCONS_00030568 other upstream 808241 9831338 ~ 9833806 (+) False XLOC_015238
TCONS_00030605 other downstream 319427 11006657 ~ 11006790 (+) True XLOC_015261
TCONS_00030617 other downstream 556656 11243886 ~ 11244007 (+) True XLOC_015265
TCONS_00030621 other downstream 1069694 11756924 ~ 11764998 (+) False XLOC_015269
TCONS_00030632 other downstream 1689592 12376822 ~ 12378603 (+) False XLOC_015273
TCONS_00030633 other downstream 1707393 12394623 ~ 12394983 (+) False XLOC_015273

Expression Profile

Expression of TCONS_00030593 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.
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Expression of TCONS_00030593 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_03277921_03285364.mRNA True 1413 mRNA 0.52 4 CI01000004 3277741 ~ 3285364 (-)