RNA id: TCONS_00030594


Basic Information

Item Value
RNA id TCONS_00030594
length 3946
RNA type mRNA
GC content 0.43
exon number 17
gene id XLOC_015256
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10709557 ~ 10760516 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGTTAAAGTCCCCCAGGTGAATGTTATCATGGGCCCATATTTGTCAGCTAAAAAGTGTGAGAAGTTGTAAGAGGAAGTTGTTCACTCGGTCAGGGTCACTTTTAAAAACAAGCTCCTGAGTCACGGGCAGCGCtgttattttgaggaactttGACCAGCCTGTGAGACTTTGCTATAAAGCAGCATGTGATtctattgtagtttttttttctatgctAAATGGAAGAACCGGGTATGACGGCTAATGTTACATCAGGAATAAGTTTGACAGAGACCAGAGAGGTTTTGTGGAGACATTTACACCCACAAATGACAGGAATCCTGCAGACTGCTTGTTGGAAAGAGTTGTAAGATTGAGTGTTAGAGATGGACTCTTTGACTGTTTCATCTCTGTCTTCTACACCGGGATCTGAGCTCAGCACAGATGAGATGAAGCTACTTGCGAAACTAGAGGAACAGAACAGGCTGTTAGAGACAGACAGTAAGTCTCTCTACTCTGTAAATGGAGTCCTGCGAAATCCCACTTCACCCAAAACCTTCTCTTTGGAGGAGAATATATGGGAGAATGTCATTAATGAATGGGAAGATTGGAGCAAGAGAAAAGTGGGGCAGATCAAGGTGTTGACCAGAAGGGGTGTCCCAGCTCATCTGCGGGCCATGGTTTGGCAGCTGCTGTGTGACTCTGGGAATGTGTCAGTGCGTCCGCAGTACTCAGATCTGCTGAAGAGCTCTTCTCCCTCTGAAACACTGATACACAGAGACCTGACGCGAACCTTCCCACACCACCAGCTCTTCCACAACCACCAGAGCATCTCCAAGGAGACACTGTTCAATGTGCTGAAGGCCTACTCAGTCTTAGACCAAGAAATTGGGTACTGCAAGGGAAGTGTGTTTATTGTAGGCCTGTTGCTCACACAGATGGCTGAAGAGGAGGCCTTCTGTGTTTTTGTAAGGCTGATGAAGGACTTCAGAATGAGGGAGCTCTATAAATCCAGCAGAGATGAGCTCGGATGCTGCATTTACCAGTTTGACTCTATGATTAAGGAGCAGCTACCTGAGCTTCATTCCCACTTCCAGACTCAGGGTTTCCAGACCTCTGTGTTCTCCTCATCCTGGTTTTACAGCATCTTCCTTTCATCTCTGCCAATCTCAGCTGCCATGCGGATTTTCGATATCTTTATGTGTGAGGGTTTGGAGATCGTCTTCCGGGTTGGTTTGGCTGTACTTGACATGAAGCAGACAGAACTCATCAAGCTTGATAATGAGGGGATGATGAAATGCTTGCAGAATCTAGAATCATGGGAATCAAATCCGGATTTGATGATCGAAGCAGcatatcaaataaaatacaacGGCAGCCAAATGAAACAATTTAGAAAAGATTATGAAGCTATCAAGGCGAAAGAGTTGGAGGAGCAGGAGGAACTAAAAGGACTTTGCTCTGAGAATAAACATTTAAAGCACAGACTTGCCATATTGGAGAGGAGGTGCTCTGAGAAACTGGTGTCGCAGCTGAGGAAAGAGCTGGAGAAAACTCAGCTGAACATTGCCAGCTCACAAAACGCTTTAAAGGAGATGCAGGCAAACACCTCACAGTTGGAAGAGatcaGCGCTGCACCTGATGAGCACAGTGTGTTGTACCTGCGGACAGAGCTAATCAGCTGTAGACTGAGGGAAGCAGAGGCACTTACTGAACTCAAACAGCTCAAAAATCACATTAAAGACATGGATGAGAAATTGCAGCAGGTGCTGTGTGGAGGTCAACAGAGGGTCAGCAGCACACAGAATGACCTGCAGGTGGAGCTGCTGAGCACCAGACTGAAGGAAACACTCACCCAGGCCATACTAAAGGAGAGCCGTCATGCACTGATGCAGCTGCAGACACAGAATGAAATTCACAGAAACCAACTCAAGCGAACTGAAGCGCATGTGAGCAGCCAGCGAGATCATCTACAGGAACTGACATCACACAACAAAGATCTGCACAGCCAATTACAGCAGATCAGATGCCACTTTTTAGCTGTTCAAAACAAGTGGAAAGGAAACGAAGATGGAGATGCAGGAAACTTGATCGAACGTCTTCAAAAGCAGATCACTGAGTTACAAATTCAAATTCAGACTTTCTCCAAGTGTGCTCCGTCATCTTGTCAACCCTCCACATCCGCCTCTCTGGAGCACAAGGACACCTAAAAATGGCCCTTGCGCCCAGCCGTCCCGGCACTCTGGCTCCAGCCGCACACTGTAGAGCTCGACCCACATGCTGCAGCATCCACTGATTCACACTCGAACACACTGCAACACATCGAGTGTCATGAGCACACacactgtcagttttgacacttCAATGTGACAAGATTTTCTCTTTCTTAGATCTTAGATTCTTAAAATGTCAAGTACTTTGCAAAGAGAAACTGCTGTTATTTACTGATTGTCAGCCATGAATATCGTACTCCTGAATCCTGAAAATTCAGAGCAACAGAGATTACAgcagaatgagtgtgtgtttgagtgatttCCTCGCCGCTGTAAAAGTCACAGATTTAGTAGACAGTAAATTGCAAGTTATAAGAGGGAcgacatggtgactcagtggttagcactgttgcctcacagcaaaaaggttgctggtttgagttctggctggggcagttggcatttctatgtggagtttgcatgttcttcccgtgttcttGTGggctttctccgggtgctctggtttcccccacagtccaaagacaagcagtacaggtgaattaaaacCAGAAcatctggaagaaacccacacaaacatggggagaacattcaaactctacacagaaatgctaactgacccagctgaggttcgaaccagtgaccttcttgctgtgagacgatcgtgCTATACCCACTCCACCACCGTGATGCctgaagtataaattatacctattaattatatataacataattttctatcagggcgacgcagtggggcaataggtagtgctgtcacctcacagcaagaaagtcgcaggttcgagcctcggctgggtcagttggcgtttctgcatggagtttgcatgttctccctgcattcgtgtaggtttcctccgggtgctccagtttcccccacagtccaaagacatgcggtgaattgggtaggctaaattgtctgtagtgtatgtctgtgaatgagtgcactgtaaacgatttcttgttaaatcaacagtaagttactggcaacaattatccagtagctgctgtatttcataaaacggtaacattactgtaatactaattacattagtattacatttactgtaaaatgtaatacatcattttactgttgttgatttttactgtaacaccaattacagtagtgatacacatactgcaaaactgaaaacagtattttattgtacatttttaccatgaagaactacggtattttaacgttacttttattattactgtatagtattttacagttattaaatgttattttattttatttaatagtgctactttataatgggtaaaaatgttcaaaaattgcacaagtgttattttaactgttcaagaaatacaagaaaaataaagaaactgaaactttaacttcacaataaaggtttattgtgtaaaccatgctaaaacagtagcaataattcaatataacaaagcaacagaacactaataaacaattgatcattaaaaccagtcaacaattaatgcatcaaaaattattacaattttaaaaacaggtgaaaatactgctacaagacaggaaatgatgaaggccaaatgatgtggaaagggacagtgaaaaagggcagcagcacttctgatgatcctgcaaaaatgacacgcaaaatcaatcactgaagtaaaaactaatcatccctcaaaccatttaattcattcagaaacgaaacactgcactgttgtttatatatatatatatatatatat

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110218-2 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human EVI5 (ecotropic viral integration site 5).

Ensembl:

ensembl_id ENSDART00000109723

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033489 lncRNA upstream 102228 10604513 ~ 10607329 (+) True XLOC_015254
TCONS_00033488 lncRNA upstream 145171 10563499 ~ 10564386 (+) True XLOC_015253
TCONS_00030592 lncRNA upstream 293285 10386479 ~ 10416272 (+) True XLOC_015252
TCONS_00033487 lncRNA upstream 423928 10284761 ~ 10285629 (+) True XLOC_015251
TCONS_00030570 lncRNA upstream 870908 9838071 ~ 9838649 (+) True XLOC_015238
TCONS_00030612 lncRNA downstream 294800 11055316 ~ 11063844 (+) True XLOC_015262
TCONS_00030616 lncRNA downstream 447947 11208463 ~ 11209682 (+) True XLOC_015264
TCONS_00033490 lncRNA downstream 868486 11629002 ~ 11633323 (+) False XLOC_015266
TCONS_00033491 lncRNA downstream 868495 11629011 ~ 11633323 (+) False XLOC_015266
TCONS_00033492 lncRNA downstream 868527 11629043 ~ 11633323 (+) True XLOC_015266
TCONS_00030593 mRNA upstream 22327 10642047 ~ 10687230 (+) True XLOC_015255
TCONS_00030591 mRNA upstream 424985 10280645 ~ 10284572 (+) True XLOC_015250
TCONS_00030589 mRNA upstream 540124 10160484 ~ 10169433 (+) True XLOC_015248
TCONS_00030587 mRNA upstream 557718 10147103 ~ 10151839 (+) False XLOC_015247
TCONS_00030597 mRNA downstream 6228 10766744 ~ 10785649 (+) False XLOC_015257
TCONS_00030598 mRNA downstream 11271 10771787 ~ 10785866 (+) True XLOC_015257
TCONS_00030599 mRNA downstream 60611 10821127 ~ 10857898 (+) False XLOC_015258
TCONS_00030601 mRNA downstream 60638 10821154 ~ 10857897 (+) False XLOC_015258
TCONS_00030600 mRNA downstream 60638 10821154 ~ 10857897 (+) False XLOC_015258
TCONS_00030590 other upstream 503439 10206001 ~ 10206118 (+) True XLOC_015249
TCONS_00030577 other upstream 726604 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030571 other upstream 833912 9875529 ~ 9875645 (+) True XLOC_015239
TCONS_00030569 other upstream 867693 9838032 ~ 9841864 (+) False XLOC_015238
TCONS_00030568 other upstream 875751 9831338 ~ 9833806 (+) False XLOC_015238
TCONS_00030605 other downstream 246141 11006657 ~ 11006790 (+) True XLOC_015261
TCONS_00030617 other downstream 483370 11243886 ~ 11244007 (+) True XLOC_015265
TCONS_00030621 other downstream 996408 11756924 ~ 11764998 (+) False XLOC_015269
TCONS_00030632 other downstream 1616306 12376822 ~ 12378603 (+) False XLOC_015273
TCONS_00030633 other downstream 1634107 12394623 ~ 12394983 (+) False XLOC_015273

Expression Profile

Expression of TCONS_00030594 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.
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Expression of TCONS_00030594 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_03244252_03265862.mRNA True 2484 mRNA 0.47 17 CI01000004 3243903 ~ 3266047 (-)