RNA id: TCONS_00030597


Basic Information

Item Value
RNA id TCONS_00030597
length 1464
RNA type mRNA
GC content 0.47
exon number 7
gene id XLOC_015257
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 10766744 ~ 10785866 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGACAGAGCAGCACAGCATTAAACTCCACTCCACTCATCTCTATAGCGGGACACAGGAGCGCACAGCAACAGGCTAGATTGGAGAGCTGTGAGTGATTGGTGACCCTGAAGCTGATAACGGAGCGTAAACATGCCGAGGTCATTTTTGGTGAAGAGCAAACGGGCGCACAGTTATCATCAGCCCCGTTACCTGGATGACAACTGCATCTCAATCGAGAAACTTCTCACTTGCCAAGAAAGTCAAACCGGACAGGCTCCTGAAAGCCCGCTGGATGTGGGCAATCAGTCCCCTAAAGCCAGCATGGTGTGCACGGCAGATCAGTCTTCTCAACAGTCCCCGCTGAGCTGCGAGGGCAGTGTGTGTGACCGCTCATCCGACTATGAGGACTTCTGGAGACCCCTGTCATCAGGAACCTCGCCGGATCTGGATAAATGCCCGGTTCCTTCTCCAGACGACTCTCAGCCTTTCGACATGTCCTTCCGTCCATACGTTTGGTCTCATTCATCATCTGAGCTCAGGCATCTCATTCAGTCCTGCAATCGTGTTTCTGTGGATTCAGACTCGTCAGTGGGGGTTTACGATGCTATGGACAGAAGGCCGAGCGCTCATCTCCTCATCCAACCAACACAATCTAGGCGATTTTACCAGGACTATGGCTCCCTGACCCCTAACCTGCTGGATAATCGAGGCTTTTACACTGACTTCAAGATGTCGACTAAAGTAGCAGAGACTGATTCAGAGTCAGATATGACGTGCACACGACTTCAACTAAGCGGGTCCTACAAATGCATAAAATGCACTAAGGTGTTTTCCACTCCCCATGGCTTGGAAGTTCACGTGCGAAGGTCACACAGCGGCACAAGGCCCTTTGCCTGCGAAATCTGTGGCAAAACCTTCGGCCACGCCGTCAGTCTGGAGCAACATAAAGCCGTCCATTCACAAGAAAGGGTCTTCAGCTGTAAAATCTGTGACAAAAGCTTTAAGAGATCGTCCACTTTGTCCACGCACCTTCTCATCCACTCGGACACCAGACCGTATCCCTGTCAGTACTGCGGAAAACGCTTCCATCAGAAATCTGATATGAAGAAGCACACGTTCATTCATACAGGTGAAAAGCCTCACAAATGTCAAGTGTGTGGCAAAGCTTTCAGTCAGAGTTCAAACCTCATCACGCACAGCAGAAAACACACTGGATTCAAACCTTTCGGATGTGACCTGTGTGGCAAAGGCTTCCAGCGCAAAGTAGATCTCAGGAGACACAAAGAAACACAGCACGGGctaaaataatgactaaaaaacaACAATACGTTGGTTTGCTTGCACGTGAGACACTATGTAGAATTAGAAGGTTAATATTGTGTGCTTTTGTTTAGGATCCAGTATTTTTTCCAGTTTccagtattttataataaattgtaattaatttgtccttgtaaaatattaataaagagattaagaaTA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0005654 nucleoplasm cellular_component
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-534 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within primitive erythrocyte differentiation. Predicted to be active in nucleoplasm. Is expressed in several structures, including artery; hematopoietic cell; intermediate cell mass of mesoderm; mesoderm; and sensory system. Human ortholog(s) of this gene implicated in acute myeloid leukemia and severe congenital neutropenia 2. Orthologous to human GFI1 (growth factor independent 1 transcriptional repressor).

Ensembl:

ensembl_id ENSDART00000015379

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033489 lncRNA upstream 159415 10604513 ~ 10607329 (+) True XLOC_015254
TCONS_00033488 lncRNA upstream 202358 10563499 ~ 10564386 (+) True XLOC_015253
TCONS_00030592 lncRNA upstream 350472 10386479 ~ 10416272 (+) True XLOC_015252
TCONS_00033487 lncRNA upstream 481115 10284761 ~ 10285629 (+) True XLOC_015251
TCONS_00030570 lncRNA upstream 928095 9838071 ~ 9838649 (+) True XLOC_015238
TCONS_00030612 lncRNA downstream 269667 11055316 ~ 11063844 (+) True XLOC_015262
TCONS_00030616 lncRNA downstream 422814 11208463 ~ 11209682 (+) True XLOC_015264
TCONS_00033490 lncRNA downstream 843353 11629002 ~ 11633323 (+) False XLOC_015266
TCONS_00033491 lncRNA downstream 843362 11629011 ~ 11633323 (+) False XLOC_015266
TCONS_00033492 lncRNA downstream 843394 11629043 ~ 11633323 (+) True XLOC_015266
TCONS_00030595 mRNA upstream 6228 10709557 ~ 10760516 (+) False XLOC_015256
TCONS_00030594 mRNA upstream 6228 10709557 ~ 10760516 (+) False XLOC_015256
TCONS_00030596 mRNA upstream 31017 10709710 ~ 10735727 (+) True XLOC_015256
TCONS_00030593 mRNA upstream 79514 10642047 ~ 10687230 (+) True XLOC_015255
TCONS_00030591 mRNA upstream 482172 10280645 ~ 10284572 (+) True XLOC_015250
TCONS_00030599 mRNA downstream 35478 10821127 ~ 10857898 (+) False XLOC_015258
TCONS_00030601 mRNA downstream 35505 10821154 ~ 10857897 (+) False XLOC_015258
TCONS_00030600 mRNA downstream 35505 10821154 ~ 10857897 (+) False XLOC_015258
TCONS_00030602 mRNA downstream 35930 10821579 ~ 10857271 (+) True XLOC_015258
TCONS_00030603 mRNA downstream 92757 10878406 ~ 10880549 (+) True XLOC_015259
TCONS_00030590 other upstream 560626 10206001 ~ 10206118 (+) True XLOC_015249
TCONS_00030577 other upstream 783791 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030571 other upstream 891099 9875529 ~ 9875645 (+) True XLOC_015239
TCONS_00030569 other upstream 924880 9838032 ~ 9841864 (+) False XLOC_015238
TCONS_00030568 other upstream 932938 9831338 ~ 9833806 (+) False XLOC_015238
TCONS_00030605 other downstream 221008 11006657 ~ 11006790 (+) True XLOC_015261
TCONS_00030617 other downstream 458237 11243886 ~ 11244007 (+) True XLOC_015265
TCONS_00030621 other downstream 971275 11756924 ~ 11764998 (+) False XLOC_015269
TCONS_00030632 other downstream 1591173 12376822 ~ 12378603 (+) False XLOC_015273
TCONS_00030633 other downstream 1608974 12394623 ~ 12394983 (+) False XLOC_015273

Expression Profile

Expression of TCONS_00030597 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.
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Expression of TCONS_00030597 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_03238528_03240932.mRNA True 1881 mRNA 0.45 6 CI01000004 3238358 ~ 3241491 (-)