RNA id: TU378148



Basic Information


Item Value
RNA id TU378148
length 641
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G334078
representative True

Chromosome Information


Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 23808854 ~ 23809760 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCAGCTATGTAACCCATTATAcgtgtccgaaatggcaccctattccctatgggcccaggtcaaaagtagtgcactatgtagggaatagggtgccatttgagatgctgtCATATTGTCTAGTGTGTCTTCTTGTTCTTACCTTCCAGAAGAGGATGCTACAGTGTCTGCAGAAGTGCAGTGTGTCTCCGTACTGCTCTCTCTTGGGGTAGTATTTCTGTAGGGTGTAGTACATGACCTTCCAGTCCACATGGCCCCTCTCTGACAAGATCAGATGCCTGCAGAACTGTTTCTCTGCAAAGTGAAACTGGCACAGCTTCTTCCACAGGTGCCGGTCCTCACTGAGCATGTGAAGAGTGGGCGTGGCCTGTCCCAGGTTGATGATGTCACAGGCGTCGGAGAACTTGTACAGGATGTTGTTCTGCATGTCTAGCGGCAGGTCACGCAGCGTCATCCCATTGGACatttgctgggggggggggggagaaatatACATATGTTGAAACTATGGCAAGACTGTCACATAACTACCAGGTCAATTATCCTCCAAGCAAGCGGTCTCTCGTCTCTTGAAACTAAACAGATGGCACACGTCTAAGTACAGAAGTTACAACTTTTTACAAAGCAAACATTAACCACCTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU377437 lncRNA upstream 35863 23768487 ~ 23772991 (+) True LOC110522416
TU377436 lncRNA upstream 35913 23768487 ~ 23772941 (+) False LOC110522416
TU377558 lncRNA upstream 70714 23735093 ~ 23738140 (+) True G333528
TU377538 lncRNA upstream 123989 23684555 ~ 23684865 (+) True G333508
TU377537 lncRNA upstream 127302 23681353 ~ 23681552 (+) True G333507
TU378177 lncRNA downstream 10821 23820581 ~ 23820857 (+) True G334105
TU378182 lncRNA downstream 15542 23825302 ~ 23825540 (+) True G334110
TU378190 lncRNA downstream 25877 23835637 ~ 23837875 (+) False G334116
TU378195 lncRNA downstream 26113 23835873 ~ 23836532 (+) False G334116
TU378193 lncRNA downstream 26192 23835952 ~ 23837797 (+) False G334116
XM_021600791.2 mRNA upstream 7347 23778611 ~ 23801507 (+) True si:ch211-225h24.2
XR_002473313.2 mRNA upstream 37850 23768489 ~ 23771004 (+) False LOC110522416
XM_021600794.2 mRNA upstream 60461 23745535 ~ 23748393 (+) False ccdc167
XM_036975963.1 mRNA upstream 89188 23666631 ~ 23719666 (+) False nhsl1b
XM_021600788.2 mRNA downstream 56980 23866740 ~ 23879587 (+) False acp1
XM_036975975.1 mRNA downstream 56980 23866740 ~ 23879587 (+) False acp1
XM_036975977.1 mRNA downstream 56980 23866740 ~ 23879587 (+) False acp1
XM_036975978.1 mRNA downstream 56991 23866751 ~ 23879587 (+) False acp1
XM_021600787.2 mRNA downstream 57031 23866791 ~ 23879587 (+) False acp1
TU377442 other upstream 60583 23745829 ~ 23748271 (+) True ccdc167
TU377043 other upstream 850658 22955879 ~ 22958196 (+) True G333079
TU376404 other upstream 1215492 22592930 ~ 22593362 (+) True G332507
TU376355 other upstream 1309858 22498500 ~ 22498996 (+) True G332458
TU375361 other upstream 2107240 21688972 ~ 21701614 (+) True LOC110522308
TU378192 other downstream 24061 23833821 ~ 23834422 (+) False G334116
TU378440 other downstream 254071 24063831 ~ 24069676 (+) False si:ch211-51e12.7
TU378609 other downstream 607822 24417582 ~ 24418946 (+) True G334475
TU378607 other downstream 610354 24420114 ~ 24422731 (+) True G334473
TU379995 other downstream 2241293 26051053 ~ 26057691 (+) True LOC110522376

Expression Profile