RNA id: TU378607


Basic Information

Item Value
RNA id TU378607
length 2216
RNA type TUCP
GC content 0.47
exon number 2
gene id G334473
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 24420114 ~ 24422731 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTCATTGAAGTTCTTTATTTAAACCAAGTCCAACATAATATAACAATTTTTGTTCCAGATTTCTGCAAAGAGAACATTCCAGTCAAATTAGGATCACAACGGCACCTGCACTGGTTACAGAGGCATTCTAATGAGTCGGAAATAACATTTTGTACTATCAAACAAACAGAAATACATCATTAGACAGGTGTTAGTGCTATTCTTTTAACAACACACACCTTGTACGTGTGATTGCACTGCCCCAAAGACTATGATTTATCTATAGTTTCCCAGAGTTCAACTTCAGGTATTTAACTATGAAAATGTAAACTCCGGGACTGTGGTCACTGTGCAAACCCCGATGTATGCAAACAAAAACGCATGCAATAAATTGACAAGACAAACTGATGACGTTGATTAAGACCCAGAAAATACCAGCAACCACAAGTTAACTCTGTAATGTCTTGCCAAGCTCATGCAAAATAAATGGCTAAAAAATAGCTGCTGGCTTTGGGTGTTACATAAGGTCTCAACTTAAAATAACAATTCTAAACGATTCACGACAGGCCAACTTAACATGTAAATGTTCAAATTGCACCTTGCATCTTATTGCCTCTGATTATGAATGAAATGTGTCTCAAATCTATATTTTGTGTAGTCGCTGTTGCGGAGACAAAAACATTACATAAATTACCTAATATGGCTGGAAAAAAGTCACTTAAGATCAGATAAGCATGTTTCAATTCATGACTTGGAATTTCAATGCTTCTAAATTAACTGATTTGAACTGGAATCGAGGTAGAGCCCGACCCTAGTACTGAATGATGGTAAACAACCGtcaacacatttgttaaatggGAGAAGTAAACGTCATTGTTTTGTAGTTATGCCAGGATGGATTGCTAACCAGCAGTTGATCATTATTTAAATGGCAGAGGCTGGGGATCCGGAGGTCACAGCCCCATCCCACTGGATCCCTTTCCCCAGAGCTGAAGATCCCACTCACGTTCTGTGCATGTGTTTCTTTAACTCTACGCACACCCAAACTTCTGGTCACCCTCCCTCGAGTTTGATCTAACTTTATTAAACAAGCACCTTTCGCCAGAGTAGCTTCTTCTCTGGGCAGCTGAACAAATAGAACAGAGATGGTGTGTAAAGTAGAGATTACCACACATTCACAGAAGCTGTGAACCTTTAGCTGTCGGGACGACGGGTCCAGAGAAGTCGGATCTGCAGCCACTCCCTATTTAACTACCCTCCTCTTTTTAAAGTATCCTCTATCATCCTCCTTTAAACCACTCTCCTCATTTAAATACATTAGGTAGTTCTACGACAAAACAAACTACACCTCTAACCTGGCATATGATTACAAGTACACTGGCCCTGCTCACGCTCTTACTTCCTCTGATTATGATGACACCACTTATTATGAACATATTGACGTCATTTCCTGTCCCTGACAGGTCTACTGTTCCCTGTGAGGGCTGGAGAACTGGACCACAGCGTACTTCCCGCTGGTCATCCAGCTGGGGTCCTGGGTGTTGAGGTTCTCCCCCTGCCCCGGCTGGAGCCCCACCTGGATGTTAGCCTTCAGAGTCCTCAGACTGCACAGGGGAGCTGGGCCGAACCCCCTCAGTGCCCTATCAAACGGCACCATGTGATCCCACTCCCTGTCCCCAGTCAGCTTCCTGTAGTTCAGGTCTCCTTTAAACAGAATCAGGTCGGCTCCCTGCAGTGTCGCGTAGAGGTCAGGCGCGTCGCCCGCCATGTCACAATACTCATGAGGCATTGTCCAGAACGGGTGGTCGTGATAGGACCACACGCCCTCCCGTACGTAGCTCTGCCACTGGACACCGGTCTTGGACATCCACTTGTGATTGGCCGCCAGGGTCTGGCGGATGGTCCACTGGAAGTCGTGCGAGGTGACGTCGGAGACAAACCAGGGGATGGACTTGCCATGGAAGCGGACCTCCCTGGCCAGACCAGCGGACACCAGGAAGTTAGCGAGGACCAGGTCTGTGACCAGCTCGAAACCAGCGTTGTCCAGGACGATGTCCACCCTCCCTGGGGTGATTTTGCCATCCTCCCCTGGTCTCTGGGCAGAGGTCAGAGCAGACCACACCATGTTGGAGTCGTCCACCAGGATAAAAGACTTCAGgtcagacagggagtcaatggGACTGGCCTTCTGAGAGTTCTCCATGCCAGCAGAGATGGACAAGTCACACCTGTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378604 lncRNA upstream 7342 24408923 ~ 24412772 (+) True G334470
TU378589 lncRNA upstream 69666 24349692 ~ 24350448 (+) True G334455
TU378575 lncRNA upstream 72113 24300896 ~ 24348001 (+) True G334441
TU378551 lncRNA upstream 153440 24266013 ~ 24266674 (+) True G334417
TU378548 lncRNA upstream 163828 24255510 ~ 24256286 (+) True G334414
TU378616 lncRNA downstream 10753 24433484 ~ 24433935 (+) True G334482
TU378617 lncRNA downstream 12469 24435200 ~ 24435503 (+) True G334483
TU378615 lncRNA downstream 19023 24441754 ~ 24442540 (+) True zbtb2b
TU378620 lncRNA downstream 21718 24444449 ~ 24475335 (+) True G334485
TU378648 lncRNA downstream 87170 24509901 ~ 24510129 (+) True G334511
XM_036975988.1 mRNA upstream 23448 24183965 ~ 24396666 (+) True syne1a
XM_021600774.2 mRNA upstream 271777 24138959 ~ 24148337 (+) False tmem181
XM_021600775.2 mRNA upstream 271777 24141034 ~ 24148337 (+) True tmem181
XM_036975984.1 mRNA upstream 281565 24082855 ~ 24138549 (+) False tulp4a
XM_021600764.2 mRNA downstream 11404 24434135 ~ 24443445 (+) False zbtb2b
trnal-uaa mRNA downstream 222493 24645224 ~ 24645306 (+) True trnal-uaa
XM_036975991.1 mRNA downstream 225294 24648025 ~ 24989137 (+) False utrn
XM_036975995.1 mRNA downstream 251310 24674041 ~ 24989137 (+) False utrn
XM_036975989.1 mRNA downstream 251311 24674042 ~ 24989137 (+) False utrn
TU378609 other upstream 1168 24417582 ~ 24418946 (+) True G334475
TU378440 other upstream 350438 24063831 ~ 24069676 (+) False si:ch211-51e12.7
TU378192 other upstream 585692 23833821 ~ 23834422 (+) False G334116
TU377442 other upstream 671843 23745829 ~ 23748271 (+) True ccdc167
TU377043 other upstream 1461918 22955879 ~ 22958196 (+) True G333079
TU379995 other downstream 1628322 26051053 ~ 26057691 (+) True LOC110522376
TU380919 other downstream 2470404 26893135 ~ 26894837 (+) False G336464
TU380920 other downstream 2470404 26893135 ~ 26894837 (+) False G336464
TU380925 other downstream 2470404 26893135 ~ 26894837 (+) False G336464
TU380927 other downstream 2470404 26893135 ~ 26894837 (+) True G336464

Expression Profile