RNA id: TCONS_00030615


Basic Information

Item Value
RNA id TCONS_00030615
length 1052
RNA type mRNA
GC content 0.48
exon number 6
gene id XLOC_015264
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 11205795 ~ 11210168 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttcttctttttttccacaGAGACAGTCGCTTTTTAGGAGTTTGGATTTAGTTAACATGCTTAAAAAATGTCTGAGTTTggaaagcagaaaaaaacaattacCAACAGGCTACTACTCTTGAATGCGACATAAAACGGTCAATATTACCTGAGGACTTTGAGCACTTGAAAAGGATGACGCCTTGCGTTCAGAATCGCCGGTGTTTTTCGGTGTCTCCTCTCGCTATAGTTAGAGGTTGTCATGGTAAACGGCGAGTGGTCGTTAACGGGTAGCTCGGCCCGGAGGTTAAAAGGCGGCAGCGCTGCCGTGCACTGTGTCTCTCAGAGCTGCTCCTCTCGACATGCCCGCTAGCTGTGGAGGGTCAGTCCTCTGCACACCTCAGGCTAAAACTCAAGACCTGTTTGAAGAGGTATCGTGTTCGTCGTCGTTGTCTTTGTCGCCAAGCTCTTCACCTCATACCATGACAAAGAAAGCCATATGTACCAGTTGCGGAACTGAGATTGTAGATAAATATCTCCTCAAGGTGAACGACATGTGCTGGCACGTGAGATGCCTGTCCTGCAGCGTGTGCCAAACATCTCTGGGCAGACACATCAGCTGTTATATAAAAGAAAAGGAGATATTTTGTAAACTGGATTACTTcagGAAATACGGAACACGTTGCGCTCACTGTGGCAGAAACATCCATTCAAACGACTGGGTTCGCAGAGCAAAAGGAAACACCTACCACCTGGCATGTTTTGCTTGCTTCTCCTGCAAGAGGCAGCTGTCTACAGGAGAAGAGTTTGCCCTGGTGGATGAGAGGGTTTTGTGTCGTGTCCACTATGACTGCATGTTGGACAACCTGAAGCGTGCCATGGAGAATGGAAAAGGAGTGAATGTGGAGGGAGCTGTTCCCTCAGAGCAGGAAGTAAATCAGCCTAAACCGGCCAAGAGGGCACGCACAAGTTTTACAGCTGACCAGTTACAGgtgATGCAAGCCCAGTTTGCTCAGGACAACAATCCAGATGCTCAGACTTTACAAAAGTTGGCAGAAAGGACTGGTCTTAGC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030182 neuron differentiation biological_process
GO:0021884 forebrain neuron development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031008-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in forebrain neuron development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in brain; dental mesenchyme; and pharynx. Orthologous to human LHX8 (LIM homeobox 8).

Ensembl:

ensembl_id ENSDART00000144982

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030612 lncRNA upstream 142473 11055316 ~ 11063844 (+) True XLOC_015262
TCONS_00033489 lncRNA upstream 598988 10604513 ~ 10607329 (+) True XLOC_015254
TCONS_00033488 lncRNA upstream 641931 10563499 ~ 10564386 (+) True XLOC_015253
TCONS_00030592 lncRNA upstream 790045 10386479 ~ 10416272 (+) True XLOC_015252
TCONS_00033487 lncRNA upstream 920688 10284761 ~ 10285629 (+) True XLOC_015251
TCONS_00033490 lncRNA downstream 420254 11629002 ~ 11633323 (+) False XLOC_015266
TCONS_00033491 lncRNA downstream 420263 11629011 ~ 11633323 (+) False XLOC_015266
TCONS_00033492 lncRNA downstream 420295 11629043 ~ 11633323 (+) True XLOC_015266
TCONS_00030618 lncRNA downstream 439415 11648163 ~ 11648838 (+) True XLOC_015267
TCONS_00033493 lncRNA downstream 1427179 12635927 ~ 12637877 (+) True XLOC_015274
TCONS_00030613 mRNA upstream 80096 11119315 ~ 11126221 (+) True XLOC_015263
TCONS_00030608 mRNA upstream 142439 11029138 ~ 11063878 (+) False XLOC_015262
TCONS_00030619 mRNA downstream 461522 11670270 ~ 11677705 (+) True XLOC_015268
TCONS_00030620 mRNA downstream 476994 11685742 ~ 11833284 (+) False XLOC_015269
TCONS_00030622 mRNA downstream 551800 11760548 ~ 11833356 (+) True XLOC_015269
TCONS_00030623 mRNA downstream 714867 11923615 ~ 11945936 (+) False XLOC_015270
TCONS_00030624 mRNA downstream 715076 11923824 ~ 11944959 (+) True XLOC_015270
TCONS_00030605 other upstream 199527 11006657 ~ 11006790 (+) True XLOC_015261
TCONS_00030590 other upstream 1000199 10206001 ~ 10206118 (+) True XLOC_015249
TCONS_00030577 other upstream 1223364 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030571 other upstream 1330672 9875529 ~ 9875645 (+) True XLOC_015239
TCONS_00030569 other upstream 1364453 9838032 ~ 9841864 (+) False XLOC_015238
TCONS_00030617 other downstream 35138 11243886 ~ 11244007 (+) True XLOC_015265
TCONS_00030621 other downstream 548176 11756924 ~ 11764998 (+) False XLOC_015269
TCONS_00030632 other downstream 1168074 12376822 ~ 12378603 (+) False XLOC_015273
TCONS_00030633 other downstream 1185875 12394623 ~ 12394983 (+) False XLOC_015273
TCONS_00030634 other downstream 1192507 12401255 ~ 12404031 (+) True XLOC_015273

Expression Profile

Expression of TCONS_00030615 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.
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Expression of TCONS_00030615 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_03070803_03073454.mRNA True 1153 mRNA 0.49 7 CI01000004 3070616 ~ 3073481 (-)