RNA id: TU380918


Basic Information

Item Value
RNA id TU380918
length 1541
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G336464
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 26892229 ~ 26894837 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTTTAGATTCTACTGCATGATTTATTACACAGTAGGCACAAATACATTACATTTAGCATTTTTACAGGGCAGATGGCTGGCTACATACCTCATGTATACTCACTGCTATTTCTTCCTTGATCTATGTATTTTGTAATTACATGTACAGCACttcattttatattttttagTGGCACAGTTCAAACCCAACCATAGGGGGGCGGTAGTTATCCACCAAGAAGGACATTTGTTCAGTTCATATTTCCATCCCTTCAGCGCATACTGATGATGTGTCGtcccttattgcttaattagctaattaagcaataaggccagagggggtgtggtatatggccaatataccacggctaaggactgttcttacGTACGatgcaacacggagtgcctgaaCACCGGCctcagctgtggtatattggcaatatataTTGGcaaaacccccgaggtgcctcattgctattataaactggttaccagcgtaattagagcagtaaaaatacatgttttgtcatacccgtggtatatggtctgatatatgtcagccaaatcagcattcagtgctcgaaccacccagtttataagtaGCTATGCCTCCCTCTGTTCtccatgtatgttttaggaagaCTAATATGGGACATGAATGAGTTTCTCTTGTTCCCGTCAGTTCCCTTTAAAGTATGTGAGGGAGATAGGTCAGTAAATTTGGAGTGTTTATTGGTTAGTTCCATAGACTTTGCATCGTTGTATGTCCCattatggcatctgtgacagCAGGGGGAGTGCCATTGAGGGCATCTCCATTTTTAAGTAGTCAATCTTCTTCTATTACTTTTATGAGTTGGCAAAAAAAACTGAAAGGGTGCACACTGCCACCTAGAGTgggttgtttgaacaggtataaatacaaggttggtgatttactgccacctagagtgggttgtttgaacaggtataaatccaaggttggtgatttactgccacctagagtgggttgtttgaacaggtataaatacaaggttggtgatttactgccacctgcagttatgaAATGTTTCCTCACAAGtctaattcattggctgatccctcctggtgacctggatggaatcatgTGATCCTTCCCTAACCCATaagaagtcccacccagttgactacttgcTAAAATGGACTTTTGGGCACAAAAGTCCTCTAtctctctgactgactgtctgttgcGAGGTGTTTTAGCTTGTCACGTTATACTCCAGTCTAAAGGGATATAATTGATTGAGCCCTACTGTACCAATTGTTTGTGTTTTATGAGGTGTTTTTGCTGGTTATATTATACTTCAGTCTAAAAGAGAAGTTGCTGTTGGTTACCCATCCCCTTCATTTGTTGTGAGGTCTTTGGGGGTACTTTACTGTGatcctctctttgtgtgtgtagtgttacTGCGGTCCCCTTGAGTCCAGTACATCTCTGTCTGCATCTCGGTCAGTCTGGAGATGGTCCTCTGGAACGCAAAGATCTCCTCCTCCGCTGTGAACAGAGACAGATGGTCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380936 lncRNA upstream 3952 26888641 ~ 26889183 (+) False G336466
TU380937 lncRNA upstream 3952 26888807 ~ 26889183 (+) True G336466
TU380917 lncRNA upstream 7797 26885134 ~ 26885338 (+) True G336463
TU380915 lncRNA upstream 9517 26883362 ~ 26883618 (+) True G336461
TU380909 lncRNA upstream 16966 26875773 ~ 26876169 (+) True G336455
TU380995 lncRNA downstream 83350 26978187 ~ 26978399 (+) True G336519
TU381026 lncRNA downstream 149865 27044702 ~ 27045693 (+) True G336550
TU381134 lncRNA downstream 311992 27206829 ~ 27213254 (+) True G336650
TU381193 lncRNA downstream 401709 27296546 ~ 27298077 (+) True G336705
TU381197 lncRNA downstream 407835 27302672 ~ 27305939 (+) True G336709
XM_021600702.2 mRNA upstream 136591 26686142 ~ 26756544 (+) False sesn1
XM_021600704.2 mRNA upstream 136594 26749514 ~ 26756541 (+) False sesn1
XM_021600703.2 mRNA upstream 136594 26749541 ~ 26756541 (+) True sesn1
XM_021600709.2 mRNA upstream 225378 26651503 ~ 26667757 (+) False LOC110522366
XM_021600711.2 mRNA upstream 225378 26651503 ~ 26667757 (+) False LOC110522366
XM_021600700.2 mRNA downstream 40998 26935835 ~ 26961848 (+) True snx3
XM_021600696.2 mRNA downstream 103655 26998492 ~ 27004619 (+) False LOC110522356
XM_021600695.2 mRNA downstream 103656 26998493 ~ 27004619 (+) False LOC110522356
XM_036976024.1 mRNA downstream 103708 26998545 ~ 27004619 (+) True LOC110522356
XM_036976025.1 mRNA downstream 159791 27054628 ~ 27185449 (+) False LOC110522355
TU379995 other upstream 835444 26051053 ~ 26057691 (+) True LOC110522376
TU378607 other upstream 2470404 24420114 ~ 24422731 (+) True G334473
TU378609 other upstream 2474189 24417582 ~ 24418946 (+) True G334475
TU378440 other upstream 2823459 24063831 ~ 24069676 (+) False si:ch211-51e12.7
TU378192 other upstream 3058713 23833821 ~ 23834422 (+) False G334116
TU381040 other downstream 281544 27176381 ~ 27184970 (+) True LOC110522355
TU381324 other downstream 696015 27590852 ~ 27601556 (+) True LOC118964415
TU384407 other downstream 1963879 28858716 ~ 28859155 (+) True G339660
TU384441 other downstream 2019762 28914599 ~ 28915539 (+) True G339693
TU384628 other downstream 2271681 29166518 ~ 29166996 (+) True G339830

Expression Profile