RNA id: TCONS_00033492


Basic Information

Item Value
RNA id TCONS_00033492
length 3608
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id XLOC_015266
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 11629002 ~ 11633323 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tcccaacttttttttgttttggggtTGTATAACATCACATAAAAAATGACAGTTCGCTACTCATAGaacctattgtcatttatttattaaaggcaGAATGAAGACGTCGATCAGTGTGATGTCAAATAACATGCCTCAAATCTCTGAGAAGAAAAGGGCACATGCAgcaaaaagaaatacaaataataaaataaaatcattcctCTACATGATTTTTTCATGCacactttttttaaatcagaggGAAAAACAGTACCATGGCAATCTGTGGAATCTCAACAATCATAGCAATGGTATGAATAttcatacaaaaatacattttttaaacctgCAATCACAGTGAAAGCCCTACAACAAATCAACATCAGTGTGAATAACCCAGGGCCATCATCTGAGCATCTACTCCACTCAATCCAATTAAACTTCCCTTAGAAACAAAATAAGACCTTAATcttatgctttatttatttttatttacacactgcttaaatctctgcagtttaattcacatagCAATTCAGGAATCAGTGTATAAACCATACGAACTGAGATCCGACACAAAACCAAATACACGCTACAGAGAGAAGGGACAATGCAGTGAATTATATGAAAAGTAGTCAAGTCTCTGGATTCACAGTTAAATCTTCACCCATAACCATTTAAACCTGGTTTTACCAGACATTTTGGAAACattctaaaaaaaatagataaataaaaataaaatcacatgacaTGACATACAGCTACCGGTTCATCTTGGagagtttttattaaataaaataaaggtgaCTTGATTTGACCCCAGACGCTGTTagagacagttcatccaaaactgaaaatttgcaATTAAAGggttagctcacccaaaaatgacaattctgttcataattacTCAAGTTGTTCCAACTGCTTGATGGTTtagaacagtggtcaccaaacttgttcctggagggccggtgtcctgcagattttagctccaaccctattcaaacacacctgaacaagctaattaaggtcttactaggtatacttgaaacatccagacaggtgtgttgaggcaagtttagGGTATAGGGTATTAACACAATATCTATATAGCACAGGATTGAGCgaaagaatataataaataatttaaattaaaatgtattaaggaCCCGGAGGGACTAAGACTGGAAGCAGGAGGAGCTGAACACGCAGTGCCAGCTGACAGCTGAGTCCTGATGGAGAAATTTAGGTAAGCATAAtagtatatatagatatagatagatatgaACTGTAGGTGGTGGTATGTGCATTTTACACCAGCCCGCTAATAAAacttaagaagaagaagaagtgttgaggcaagttgaagataaacggccctccaggaccgagattggtgacccctagtTTAGAACATGAATTATGATATGGTAGATGAAACCTGAGAGCTCTCTTATTTCCCATATACAGCAACGATGCTGAAATGCCCATAAAAGGAactaaaacattgtcaaaacattccatgtggcttcagtggttcaactgtaatcatattcAGTTCATATTCATACTCCAAGAACATTTTTGTGCACCAAACAAACTCTAGAAATTACTTTATTTGCTTATCAAGGACAGTATAGTGTATTGTCATTAGTGTCAGCAGTGCAACGCACAAGGCTCGTAGCCACCATGATGCAACGTGGAATACaaagtgtttttacagtattttggtGCACAAgcgtgttcttggagcttcgtataattacagtaaactactgaagtcacatgaaatgtttGGGCTCCTTTATAAATCATACTTAGTCTTATGCTTTTAAACTCTATGAATAACTTTATTTGCTTTTGTCTTCTATTTTAAGACATGTCAGGGTGCGTGTTTATTAAGGGCAGTGCAATGTATTGACACAAGCATCGTAGTGCCGATAGTAAATGCAAACCATGATGCAATGTGGAatacaaagttgtttttacagtattttgaagCACAAACGTGTTCTTGGAGTTTCACATAATTACAGTGAACATCTGAAGTCACatgaaaagttttgaaaaatgtttgagttACTATCCTGGACTTTGAAAGTCTTgtgaccattgctgtctatggaggatgagagagctcctggatttcgTCTAAAACAgttgtcaccaaacttgttcctggagggccagtgtcctggagattttagctccaaccctaatcaaacacacctgaacaagctaattaagctcttacttgGCATACTttaaacatccaggcaggtgtgttgaggcaagttggagctaaatcctgcagggacaccggccctccaggactgagattggtgacccctggtctaaaatatcttaatgcacattttgaagaTGATCGAAGTTCTCAGGAGATTGTTAATTGTTTTGGGGTGAATTAATCCTTGTATTTGCTCACTTTAAGGCTAAGATATAGGTGTCTTTAGTAGTCTCAGTAGTTTTAAGGTAGTTGataattcataaaatgcaagttaaTGGCTAACGACACTTTGAGAGTTAAAATAAACATAGAGGGAAAAGAAAACGAATACTCCTGATGACACATGACTAATCGTTGTTAACTTTAGTTAAGTTAAACGTTAACTATTAATGTTAATCCTTAGCATTAACTAATCTTACCAAGCCCaactttggatgttaataatgcatcattttattcattttccttcagcttagtctctatttcagaggtcgccacagcagaatgaaccaccaactattcagcacacatttttaataatccaccaataaatgttaaacaatacataataaaataaatacatgaactagCGGACcgttattatatttagaaatacatCATACAGTCTGTGAACCATTATTTCCAATGGTTTTAACCTTCTTGTCACATAACGAAACTGTTTTCAACAGACAGGGAGGACACATGTGCTGTACTGTTTATCAAAACGGTATTTGTGCTTATTCTAGATGCTGTAAACTATATAAATAAGCTGGTAACACATTACATTAGTTATAggttacattagttaatgtatttaataacatgaacatttagtttttattcaacTTTGTTTATGTATGTCAATGAAACTAAGTCCATCTGTCTTAGTTTTTAACTCTCAGTGCATTACCTAGTGTTAATAAGCACAACTTTGGaattattagtaaatgttgaacaatGATAAGAGTATTGCTCGATAGTTTTTAGTTTGTGTTAGTAAAAACATGAATTATCATTAGTTAATGgaattttattgtaaagtgtgaccaaaaagaTTAATATACATCATTATGCGACAGGAAGTTCACTCTCCTTACTGGTGCGAATGCACTTGAATCTCAAGACTGATTACTGTTAATTGATTGTTTTGCATTAGACCTCAGCGCATCATCACTAGCcatgaaaatgtatttagtattAACTCTCAAAGTGttcaattcattgcattttttagaatcaccaaggaccagagattcagctaaaaatcatctttaaatgttttactaaAGGAAAAGGAAGTCAGCTACATCTTGGATAGCTTTAttgtgagtaaattttaatttggatgtactgtcgctttaaatgtGTAGCACAA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0045165 cell fate commitment biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030616 lncRNA upstream 419361 11208463 ~ 11209682 (+) True XLOC_015264
TCONS_00030612 lncRNA upstream 565199 11055316 ~ 11063844 (+) True XLOC_015262
TCONS_00033489 lncRNA upstream 1021714 10604513 ~ 10607329 (+) True XLOC_015254
TCONS_00033488 lncRNA upstream 1064657 10563499 ~ 10564386 (+) True XLOC_015253
TCONS_00030592 lncRNA upstream 1212771 10386479 ~ 10416272 (+) True XLOC_015252
TCONS_00030618 lncRNA downstream 14840 11648163 ~ 11648838 (+) True XLOC_015267
TCONS_00033493 lncRNA downstream 1002604 12635927 ~ 12637877 (+) True XLOC_015274
TCONS_00030635 lncRNA downstream 1165043 12798366 ~ 12802906 (+) True XLOC_015275
TCONS_00033242 lncRNA downstream 1214337 12847660 ~ 12852426 (+) True XLOC_015276
TCONS_00033243 lncRNA downstream 1714077 13347400 ~ 13351251 (+) False XLOC_015280
TCONS_00030614 mRNA upstream 418875 11205795 ~ 11210168 (+) False XLOC_015264
TCONS_00030615 mRNA upstream 420295 11206317 ~ 11208748 (+) False XLOC_015264
TCONS_00030613 mRNA upstream 502822 11119315 ~ 11126221 (+) True XLOC_015263
TCONS_00030610 mRNA upstream 565360 11031360 ~ 11063683 (+) False XLOC_015262
TCONS_00030609 mRNA upstream 580878 11029144 ~ 11048165 (+) False XLOC_015262
TCONS_00030619 mRNA downstream 36947 11670270 ~ 11677705 (+) True XLOC_015268
TCONS_00030620 mRNA downstream 52419 11685742 ~ 11833284 (+) False XLOC_015269
TCONS_00030622 mRNA downstream 127225 11760548 ~ 11833356 (+) True XLOC_015269
TCONS_00030623 mRNA downstream 290292 11923615 ~ 11945936 (+) False XLOC_015270
TCONS_00030624 mRNA downstream 290501 11923824 ~ 11944959 (+) True XLOC_015270
TCONS_00030617 other upstream 385036 11243886 ~ 11244007 (+) True XLOC_015265
TCONS_00030605 other upstream 622253 11006657 ~ 11006790 (+) True XLOC_015261
TCONS_00030590 other upstream 1422925 10206001 ~ 10206118 (+) True XLOC_015249
TCONS_00030577 other upstream 1646090 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030571 other upstream 1753398 9875529 ~ 9875645 (+) True XLOC_015239
TCONS_00030621 other downstream 123601 11756924 ~ 11764998 (+) False XLOC_015269
TCONS_00030632 other downstream 743499 12376822 ~ 12378603 (+) False XLOC_015273
TCONS_00030633 other downstream 761300 12394623 ~ 12394983 (+) False XLOC_015273
TCONS_00030634 other downstream 767932 12401255 ~ 12404031 (+) True XLOC_015273
TCONS_00030641 other downstream 1490243 13123566 ~ 13123682 (+) True XLOC_015279

Expression Profile

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