RNA id: TU381197


Basic Information

Item Value
RNA id TU381197
length 2863
lncRNA type antisense_over
GC content 0.57
exon number 5
gene id G336709
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 27302672 ~ 27305939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccaTTTGGCTCCATCAGGCCCAGTGATGTACCTTCGTCCATTAGGTTTTGTGTTGTCATTAGGTGTGCTGGACTCTTTGTCACTGGTCACTGTGAGATTGGGGCGGCCATTTTTACCATTACCGTTTCCGTAGCCAGGCTTGAGGCCTCCACTGGGGGTTTTACCCCTGAGGAAGGGGTCTGACCGACTGGGGTAGCGCATCCTTATCCCCTGCCCCCCCAAAGAGTCtctggatgaggaggaggaggagtcctGAGACCCCTGGGATCCCTCACTAGAGGAGGTCTgtctgagggaggggagagagagggaagggggggagCCTCCAGTGCTAACACTAGTGCCCCCGTTAACCCTGTGGTCTGGCTGTGCCAgactagaggaggaagaggaagaagaggaaggggaTGTGTCTGGGTTAGAGGAATCTAACTGTGTGCTCTGTGCTGGTTGTGCTCTAAAGGGGAACCTAGAAGCCGTCTGCCTGTTTGTGAGTAGGGGGGATCTCACCCTCCCGTTGGGACCTAAAATGGGACGTCGGGGGAATGTAGAACTGGGGATCAAACCGGGTCTGGTTCTACCAAGCTTGGGGTCCACATTCTCGTTATCCCCACTCTGGGCCACCCTGCGGGGGGTACTGGGGGctgaggtagtggtagtggtggtagtggtggtagtagttttGGGGACAGGGGTTGGGTCTGTGACTTTCTCATAGATCTCCTTACTCCCCTCGTAGAGATAGTCCTCCTCATGGTCATTACTGCTGTCCTCCCTGATGCTGCTTCCTCTGTGGACTGGCTCACTGGAGTCTCTACGACCACTagaggaggggttggaggaggaagaggaggtgatgGGATTCCTAGATCCACCTAGAACTGCATTCCTGTTGGGCAGAGAGGGTTTAGGTGACCCCGCCCTCTCCCCGTTCTTTAATgggtagagggtggaggaggtTTTAGCATCTTCACTGGTCTCCTGCAATGCTGAGGTCCTCGATTCCCCTGAGGCTCCTGCTGCCCCCGTAGCTCCTGCTGCCCCTAATGCAACTGTCCTGGAGGGGGTTCCTCTAAGGAGGGGTCTCCCTGCCCCAACGGAGGACGAGGAGGTAGTCCTGCTCCAGGGAACCCTCCCGTCCGCCCGGGGGGAGGAGGCCCTGCTACTGCTCCCCGTCCCTGTTCCAAACCTGCTCTGGTGACGGTTCCCGAAGAGGTTCATCCTGGAGGGAGGGGGAGCTGGGGTGTTGTAGTTGttctcccccctcgctctctcctctctcctgtctcccctctcaccctcctctctcctgtctcccctcccttcctcctctctcctgtctcccctctcaccctcctctctcctgtctcccctcccttcctcctctctcctgtctcccctcccttcctcctctctcctgactcccctcccttcctcctctgtcctgtctcccctccctccctcctctctcctgtctcccctctcaacctcctctctcctgtcccccgtccctgtctcctctctcctgcctcccctcactctctcctctctcctgtcctctctccctctctcctctctcctgtctcccctcccttcctcctctctcctgttctctctccctctctcctccgtcccgTCCTCTCTTGCGTCCTCCTCTGAGGGATGTGTAGAGGATATGGTCTGGGAATCGGAAGTGGGTTCTTCTTCTTTTGTGgcctttgtctctgtgtttttgtAGTCGTTGTGGTCATTTTTCTCCTGGTGGTGTGTTGAGTCCTGCGCGTTAGGAGTATGTGAGCCGTGAGTGTGTGACGTTTCAGGAATCTTGCCTCCGGTCGATGTTGAGGCTGACCCAGGTTTGCGGAGTCCAGTCAGAACTCGGCCATTTGGATTCCCTCGAGACAGGATCCCGGGTTTCCTCCTGCCATAACCATATCCACGACCTGGCAGAGCAGGACCCCTACCCACAGAAGGTGCCTCGGCCTCGGGCTCTGAGATGGCCTGCtctggggtggagggggagggttTGGTTTCTGTGACACTGGGCTGGTCATAGGTGTTTTTACCCTCGGCGTAGTTGGTGACCGCATCGTCTTTCCTGATGGCTGCTGACTCCTGGCTGTGGGATGGGCTGGaggacaaagaggaggaggaggaggcactGTCCATTTCTGCATCCTGTGTCTTCGGCTGGAACACTGACCCTAAGCCTGATGTCCGGGAGAATTGCCGTCGACCAGAGTTGATGCGTCTACCGGAGAGAGGTTTGCGGAGAGGGTAGGAGGGTTTGGACGATGATGAGGAGCCCTCTGATGAGGGAACCTCTGTTTTGAGGCTGGGGCTTGAGGTCTCATCTACATCTGgatctttccctctccctctgccatggctcctgtcctcctcctcaggTTCAGAAGGAACACCGTTGTTCTGAGTCAATGcttctttcttctcctccagAGCCTCGTTGGTGAGCATCACCTTCTTCTGTTCTTCTGGATTGGGTTCTGTTGTTTTGTACTCCTCCTGCTGTTCatcctctatttctgtctctctccccttatctCTGGCTGAAGAAGTACCGCCTCCTAGTTGCTGATTGGTCGCCCCCTTCCTGACCGTGCCCCTCACATCTGAGAAGATGCTGTGATAGGAGCGTGTCTGGGTGAGTGGGCGTGTCCGTCTGGTGGCGGAGGATGTGGTCTGGGTGGGTGTGGTCAGCTGTTCGGTCACAGCATCTAATTGGAGGTCGGTGTCATCGTCATGGTAACTGTCCTGTTCGGTGGTCCGAGAAGGTGTGTGGCTGGTTCTACGGCCTCCTTGGCCCTTGGAGTGATGAGTTGGTGGGGAGGCAGCGCTGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381193 lncRNA upstream 4595 27296546 ~ 27298077 (+) True G336705
TU381134 lncRNA upstream 89418 27206829 ~ 27213254 (+) True G336650
TU381026 lncRNA upstream 256979 27044702 ~ 27045693 (+) True G336550
TU380995 lncRNA upstream 324273 26978187 ~ 26978399 (+) True G336519
TU380933 lncRNA upstream 407835 26892981 ~ 26894837 (+) False G336464
TU381216 lncRNA downstream 21940 27327879 ~ 27333502 (+) False G336723
TU381220 lncRNA downstream 21940 27327879 ~ 27331504 (+) False G336723
TU381225 lncRNA downstream 21940 27327879 ~ 27346073 (+) False G336723
TU381223 lncRNA downstream 25021 27330960 ~ 27332881 (+) False G336723
TU381228 lncRNA downstream 28185 27334124 ~ 27340999 (+) True G336724
XM_021600692.2 mRNA upstream 107321 27186465 ~ 27195351 (+) True tcp1
XM_036976025.1 mRNA upstream 117223 27054628 ~ 27185449 (+) False LOC110522355
XM_036976027.1 mRNA upstream 117223 27099975 ~ 27185449 (+) False LOC110522355
XM_036976026.1 mRNA upstream 117223 27116411 ~ 27185449 (+) False LOC110522355
XM_036976024.1 mRNA upstream 298053 26998545 ~ 27004619 (+) True LOC110522356
XM_036976031.1 mRNA downstream 96158 27402097 ~ 27521982 (+) False LOC110522432
XM_036976030.1 mRNA downstream 96158 27402097 ~ 27523782 (+) False LOC110522432
XM_036976032.1 mRNA downstream 96158 27402097 ~ 27523782 (+) False LOC110522432
XM_036976040.1 mRNA downstream 96158 27402097 ~ 27523782 (+) False LOC110522432
XM_036976041.1 mRNA downstream 96158 27402097 ~ 27523782 (+) False LOC110522432
TU381040 other upstream 117702 27176381 ~ 27184970 (+) True LOC110522355
TU380919 other upstream 407835 26893135 ~ 26894837 (+) False G336464
TU381324 other downstream 284913 27590852 ~ 27601556 (+) True LOC118964415
TU384407 other downstream 1552777 28858716 ~ 28859155 (+) True G339660
TU384441 other downstream 1608660 28914599 ~ 28915539 (+) True G339693
TU384628 other downstream 1860579 29166518 ~ 29166996 (+) True G339830
TU384729 other downstream 2029430 29335369 ~ 29336939 (+) True G339928

Expression Profile