RNA id: TCONS_00030621


Basic Information

Item Value
RNA id TCONS_00030621
length 851
RNA type processed_transcript
GC content 0.45
exon number 4
gene id XLOC_015269
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 11685742 ~ 11833356 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGTGGCTTCACTGGAGTTCCTGGAATCAGGCATTGCTGCCCCGACTCAGGACTATCATGACCAGGGAGCTGCTAGGTCGCAACAAGGACAAGGAATACCATTACCACACACACAGCCTTGATGTTGCTTTTGGATATTTGAAGGACGTTTACTATGGAAATGGAGTCTCTTTTTTTCAGTGATTTGCCTTAAGGTCTACATTGGGACTCGTCGAGGCACACTCCACACCCTGGATGCTTATGAAAGGTGCAGGAGTACTACAGTTACACTTTGATATACCATGGAGAAGAGGTGATCTTGTTCTTCTGCAGCTAAAGAAATATAATCAAAGATCATGGGAAATTCATACGCGGGGCAGCTGAAATCTGCTCGCTTTGAGGAAGCTCTCCATAACTCAATAGAGGCTTCATTAAGGTCAAGCGGTGGTGACCCACAGCCGGTTTTCACACAGCTATATCTCGAGCCTGATCAGTATTCTGGCCATGTAGAAGATATTAAGCCCAAAATGGACCTAAGCCTGAGATCCGACCCATCCACCCATGTGCTTGTGAAATGCCACTCTTCAAATTCTGTAGAGGATATGGATGACGAGGACGATTCAGACACCAGCAGCCCACCATTGCCTTACCTGCAGGGACCCCCTCCTGATGGCTGCTGCACTGTTGATGGTTGGGAATTTAATCTAGATTTACAGTGACAAGTTGTTTATTATTTACCCGCtctcagagatggcaaaagtacacacatcctttacttaagtagaagtacagatactcatatTTGAAACGACTCAGTACTAGTCAGTACTTTGcaagttgaagtactgactacacttttgtactcagGTAAA

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0007275 multicellular organism development biological_process
GO:0001822 kidney development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4022 Involved in kidney development. Acts upstream of or within pronephros development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system and mesoderm. Used to study renal agenesis. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness and renal agenesis. Orthologous to human GREB1L (GREB1 like retinoic acid receptor coactivator).

Ensembl:

ensembl_id ENSDART00000136660

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030618 lncRNA upstream 108086 11648163 ~ 11648838 (+) True XLOC_015267
TCONS_00033490 lncRNA upstream 123601 11629002 ~ 11633323 (+) False XLOC_015266
TCONS_00033491 lncRNA upstream 123601 11629011 ~ 11633323 (+) False XLOC_015266
TCONS_00033492 lncRNA upstream 123601 11629043 ~ 11633323 (+) True XLOC_015266
TCONS_00030616 lncRNA upstream 547242 11208463 ~ 11209682 (+) True XLOC_015264
TCONS_00033493 lncRNA downstream 870929 12635927 ~ 12637877 (+) True XLOC_015274
TCONS_00030635 lncRNA downstream 1033368 12798366 ~ 12802906 (+) True XLOC_015275
TCONS_00033242 lncRNA downstream 1082662 12847660 ~ 12852426 (+) True XLOC_015276
TCONS_00033243 lncRNA downstream 1582402 13347400 ~ 13351251 (+) False XLOC_015280
TCONS_00033494 lncRNA downstream 1582464 13347462 ~ 13351299 (+) True XLOC_015280
TCONS_00030619 mRNA upstream 79219 11670270 ~ 11677705 (+) True XLOC_015268
TCONS_00030614 mRNA upstream 546756 11205795 ~ 11210168 (+) False XLOC_015264
TCONS_00030615 mRNA upstream 548176 11206317 ~ 11208748 (+) False XLOC_015264
TCONS_00030613 mRNA upstream 630703 11119315 ~ 11126221 (+) True XLOC_015263
TCONS_00030610 mRNA upstream 693241 11031360 ~ 11063683 (+) False XLOC_015262
TCONS_00030623 mRNA downstream 158617 11923615 ~ 11945936 (+) False XLOC_015270
TCONS_00030624 mRNA downstream 158826 11923824 ~ 11944959 (+) True XLOC_015270
TCONS_00030625 mRNA downstream 181556 11946554 ~ 11998297 (+) False XLOC_015271
TCONS_00030626 mRNA downstream 181556 11946554 ~ 12003175 (+) True XLOC_015271
TCONS_00030627 mRNA downstream 490570 12255568 ~ 12280508 (+) False XLOC_015272
TCONS_00030617 other upstream 512917 11243886 ~ 11244007 (+) True XLOC_015265
TCONS_00030605 other upstream 750134 11006657 ~ 11006790 (+) True XLOC_015261
TCONS_00030590 other upstream 1550806 10206001 ~ 10206118 (+) True XLOC_015249
TCONS_00030577 other upstream 1773971 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030571 other upstream 1881279 9875529 ~ 9875645 (+) True XLOC_015239
TCONS_00030632 other downstream 611824 12376822 ~ 12378603 (+) False XLOC_015273
TCONS_00030633 other downstream 629625 12394623 ~ 12394983 (+) False XLOC_015273
TCONS_00030634 other downstream 636257 12401255 ~ 12404031 (+) True XLOC_015273
TCONS_00030641 other downstream 1358568 13123566 ~ 13123682 (+) True XLOC_015279
TCONS_00030650 other downstream 2895358 14660356 ~ 14660546 (+) True XLOC_015290

Expression Profile

Expression of TCONS_00030621 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.
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Expression of TCONS_00030621 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU29405 True 697 lncRNA 0.40 3 CI01000004 2860431 ~ 2862594 (+)