Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00030622 |
| length | 8900 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 33 |
| gene id | XLOC_015269 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 11685742 ~ 11833356 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0048793 | pronephros development | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0001822 | kidney development | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-030131-4022 | Involved in kidney development. Acts upstream of or within pronephros development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system and mesoderm. Used to study renal agenesis. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness and renal agenesis. Orthologous to human GREB1L (GREB1 like retinoic acid receptor coactivator). |
| ensembl_id | ENSDART00000057268 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00030618 | lncRNA | upstream | 111710 | 11648163 ~ 11648838 (+) | True | XLOC_015267 |
| TCONS_00033490 | lncRNA | upstream | 127225 | 11629002 ~ 11633323 (+) | False | XLOC_015266 |
| TCONS_00033491 | lncRNA | upstream | 127225 | 11629011 ~ 11633323 (+) | False | XLOC_015266 |
| TCONS_00033492 | lncRNA | upstream | 127225 | 11629043 ~ 11633323 (+) | True | XLOC_015266 |
| TCONS_00030616 | lncRNA | upstream | 550866 | 11208463 ~ 11209682 (+) | True | XLOC_015264 |
| TCONS_00033493 | lncRNA | downstream | 802571 | 12635927 ~ 12637877 (+) | True | XLOC_015274 |
| TCONS_00030635 | lncRNA | downstream | 965010 | 12798366 ~ 12802906 (+) | True | XLOC_015275 |
| TCONS_00033242 | lncRNA | downstream | 1014304 | 12847660 ~ 12852426 (+) | True | XLOC_015276 |
| TCONS_00033243 | lncRNA | downstream | 1514044 | 13347400 ~ 13351251 (+) | False | XLOC_015280 |
| TCONS_00033494 | lncRNA | downstream | 1514106 | 13347462 ~ 13351299 (+) | True | XLOC_015280 |
| TCONS_00030619 | mRNA | upstream | 82843 | 11670270 ~ 11677705 (+) | True | XLOC_015268 |
| TCONS_00030614 | mRNA | upstream | 550380 | 11205795 ~ 11210168 (+) | False | XLOC_015264 |
| TCONS_00030615 | mRNA | upstream | 551800 | 11206317 ~ 11208748 (+) | False | XLOC_015264 |
| TCONS_00030613 | mRNA | upstream | 634327 | 11119315 ~ 11126221 (+) | True | XLOC_015263 |
| TCONS_00030611 | mRNA | upstream | 717481 | 11031364 ~ 11043067 (+) | False | XLOC_015262 |
| TCONS_00030623 | mRNA | downstream | 90259 | 11923615 ~ 11945936 (+) | False | XLOC_015270 |
| TCONS_00030624 | mRNA | downstream | 90468 | 11923824 ~ 11944959 (+) | True | XLOC_015270 |
| TCONS_00030625 | mRNA | downstream | 113198 | 11946554 ~ 11998297 (+) | False | XLOC_015271 |
| TCONS_00030626 | mRNA | downstream | 113198 | 11946554 ~ 12003175 (+) | True | XLOC_015271 |
| TCONS_00030627 | mRNA | downstream | 422212 | 12255568 ~ 12280508 (+) | False | XLOC_015272 |
| TCONS_00030617 | other | upstream | 516541 | 11243886 ~ 11244007 (+) | True | XLOC_015265 |
| TCONS_00030605 | other | upstream | 753758 | 11006657 ~ 11006790 (+) | True | XLOC_015261 |
| TCONS_00030590 | other | upstream | 1554430 | 10206001 ~ 10206118 (+) | True | XLOC_015249 |
| TCONS_00030577 | other | upstream | 1777595 | 9973881 ~ 9982953 (+) | True | XLOC_015242 |
| TCONS_00030571 | other | upstream | 1884903 | 9875529 ~ 9875645 (+) | True | XLOC_015239 |
| TCONS_00030632 | other | downstream | 543466 | 12376822 ~ 12378603 (+) | False | XLOC_015273 |
| TCONS_00030633 | other | downstream | 561267 | 12394623 ~ 12394983 (+) | False | XLOC_015273 |
| TCONS_00030634 | other | downstream | 567899 | 12401255 ~ 12404031 (+) | True | XLOC_015273 |
| TCONS_00030641 | other | downstream | 1290210 | 13123566 ~ 13123682 (+) | True | XLOC_015279 |
| TCONS_00030650 | other | downstream | 2827000 | 14660356 ~ 14660546 (+) | True | XLOC_015290 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000004_02834634_02863535.mRNA | True | 7794 | mRNA | 0.49 | 35 | CI01000004 | 2832744 ~ 2863598 (-) |
| bowfin (Amia calva) | AMCG00019290 | True | 8161 | mRNA | 0.55 | 31 | CM030124.1 | 12572727 ~ 12598517 (+) |
