RNA id: TCONS_00030627



Basic Information


Item Value
RNA id TCONS_00030627
length 2283
RNA type mRNA
GC content 0.40
exon number 8
gene id XLOC_015272
representative False

Chromosome Information


Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 12255568 ~ 12280508 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ACAACAAGCTGTTTTCCTCTCATGATACAGACTCACCCCTCTAGTGTTAGGTGATCTCGTAGAGCTTCAAATGGCGGCCAAATAAACTGTGAGGCTTGCATAATCAACAAGCAACCATGACAAAAGGAATGTTAAAGCGAGTATTTGGGAATTAATATCTGATTTAAGATACATATTAAGCAGAGATGCACGCCAAGCTCCACCACCCAGCCCTGACACCCATCCAGATGACGTCACTTCGGGTGTCGTCATAAACACTACCGATGTGGACGCGAGATTCATTCGGGGTTTGTAAACCAACGAGCTGCAAGAATCCAACATGGCAGGATGGGAACGCAAACAAACAGACGTGGAAAAAGGAATTGTGATCCCAGATGACTGGCCTGGATACCCGCTGGACCTGTTTACATTTCCTGAGCATTACTCCGAGGATCTGGACTGTGTCTACATTCCACACGGTGTTATCATGGACAGgatAGAGAGGTTGGCAAGAAATATCATGGATGATCTTGGGGACCATGACATTGTTGTCCTGTGCGTGCTAAAGGGAGGATATCAGTTCTGTGCTGACCTGGTGGACTGCATTAAAGTCCTGTGTTGCAACTCCAACAAGACCCTTCCCATGAGGGTGGACTTCATACGACTCAAGAGCTACCtgaacgATCAGTCAACCGAAGATCTCCACATAGAAGGGGCAGAGAACCTGTCTGCGCTCAGTGGAaagGCCATTGTGGACACTGGGAAGACCATGAAGGCTCTTCTGGATCACGTTGAAGCCTTCAAGCCTAAGATGATAAAAGTAGCTGGATTGCTGGTGAAAAGAGTGGCCAGTAAGACAGGATATCTGCCAGACTATGTGGGATTTGAGATCTCCAATCGTTTTGTGGTCGGCTATGCCTTGGATTACAATGAATACTTCAGAGACCTCAATCACATCTGTGTGATTAGTGACAGTGGGAAACAGAAATACAAGATCTAAAGAAGAAAGTCCCAGCACTGGAACATGAGCATCTGAATGTCAACTCAGGAAGATAAAAGGTGTCCATGGATCTAAAAGGATGTGTTATTAAGCACTTCCTAGCCTACAAAGATCTCCTATTTTTCCAGTGTTAGATATGAACAGGTTTTACTGGATAAGGTTTTAATTGTGAACTGAGATAAAGCTTACTGAATACTGCACCCTATAGCCTattcacacattttaaacatactaCTGCAGAAATAACATACTATTCCTACTAATATGTATGTTATTTAGTCATTAAAAGAAGGTATAGAAGGAgatgagggtgagcaaatgatgacagaaggaAATTTTTATGAGAACTTTGGGTGTTTTCAATTCACTAAAGGAACTTGTTTAccattaagttaatttaaaatatgttagGCAAGACACTAACTATTCACAAAGTTTGTTTTTCAGAACCTATAAAATGTGAACTACAGAAATAAACCGAATTTTAAGGAATTGTTGCATGTGTACATTAAAGTTTACATTTGTGAGATGTTTTTATACATTTGATAACCTCTTGTAACAACATTAAAATTTTGTGCATTTGTTATATTCgtgtacttctttttttttttacagttatattGTCAAATAGCACAGATGAAAGCATGTCTGTTGGGTTATGGATCATTTGCTGTGGTATTGTTATGGAGATCAGCAGTCATACTTGAGCGAAACAACTCAAACATGCCACACACAAAGGGATGAAGTGGAACAGAGTTTGCTTGGGTGTGTGTTATGTAACCGTGTCTGTTGCTCATTGTTTCCTTTGGCCAGCCTCTTTTGCTCATCTGACTGCTGACTGTGATCAGTGCTGGTGAAttatgtgctgtgtttgtgtCAGATACAGATTCTAGATATTTACCTGCTATGAAAGCACCTTAAAAGGCTTCTGTTTTGCCCCTTTTATCAAAGATGTTTTTATATCTCATATCGCCATAATATGTCTGAAAGTTTAGCTCAAAATTACTATTAGGTCATTTATTATATcctgctaaaaaaaattattattttttttttttgatcggAAGGAATTGTAGCTGTTTtgcgcctgtgcctttaaatgcaaatgagctggttctccccgcccactgtacTGACATATCTGCTTTTCCTGTGTCAAACAAGATAATCACAGAAACAGGCAACCAATGTTGCCAAGAATTGGTCTACTTTTGatctatgttttgttttttcatcctGCGGATTAAAGTTTTGATATATccaaagtttctttgcaaatcctgtcttgACATAATAATACACAA

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000184164

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00030618 lncRNA upstream 606730 11648163 ~ 11648838 (+) True XLOC_015267
TCONS_00033490 lncRNA upstream 622245 11629002 ~ 11633323 (+) False XLOC_015266
TCONS_00033491 lncRNA upstream 622245 11629011 ~ 11633323 (+) False XLOC_015266
TCONS_00033492 lncRNA upstream 622245 11629043 ~ 11633323 (+) True XLOC_015266
TCONS_00030616 lncRNA upstream 1045886 11208463 ~ 11209682 (+) True XLOC_015264
TCONS_00033493 lncRNA downstream 355419 12635927 ~ 12637877 (+) True XLOC_015274
TCONS_00030635 lncRNA downstream 517858 12798366 ~ 12802906 (+) True XLOC_015275
TCONS_00033242 lncRNA downstream 567152 12847660 ~ 12852426 (+) True XLOC_015276
TCONS_00033243 lncRNA downstream 1066892 13347400 ~ 13351251 (+) False XLOC_015280
TCONS_00033494 lncRNA downstream 1066954 13347462 ~ 13351299 (+) True XLOC_015280
TCONS_00030626 mRNA upstream 252393 11946554 ~ 12003175 (+) True XLOC_015271
TCONS_00030625 mRNA upstream 257271 11946554 ~ 11998297 (+) False XLOC_015271
TCONS_00030623 mRNA upstream 309632 11923615 ~ 11945936 (+) False XLOC_015270
TCONS_00030624 mRNA upstream 310609 11923824 ~ 11944959 (+) True XLOC_015270
TCONS_00030622 mRNA upstream 422212 11760548 ~ 11833356 (+) True XLOC_015269
TCONS_00030630 mRNA downstream 22019 12302527 ~ 12405209 (+) False XLOC_015273
TCONS_00030629 mRNA downstream 22019 12302527 ~ 12405209 (+) False XLOC_015273
TCONS_00030631 mRNA downstream 69362 12349870 ~ 12406641 (+) False XLOC_015273
TCONS_00030636 mRNA downstream 567094 12847602 ~ 12956329 (+) False XLOC_015276
TCONS_00030637 mRNA downstream 567106 12847614 ~ 13037544 (+) False XLOC_015276
TCONS_00030621 other upstream 490570 11756924 ~ 11764998 (+) False XLOC_015269
TCONS_00030617 other upstream 1011561 11243886 ~ 11244007 (+) True XLOC_015265
TCONS_00030605 other upstream 1248778 11006657 ~ 11006790 (+) True XLOC_015261
TCONS_00030590 other upstream 2049450 10206001 ~ 10206118 (+) True XLOC_015249
TCONS_00030577 other upstream 2272615 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030632 other downstream 96314 12376822 ~ 12378603 (+) False XLOC_015273
TCONS_00030633 other downstream 114115 12394623 ~ 12394983 (+) False XLOC_015273
TCONS_00030634 other downstream 120747 12401255 ~ 12404031 (+) True XLOC_015273
TCONS_00030641 other downstream 843058 13123566 ~ 13123682 (+) True XLOC_015279
TCONS_00030650 other downstream 2379848 14660356 ~ 14660546 (+) True XLOC_015290

Expression Profile


Expression of TCONS_00030627 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.
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Expression of TCONS_00030627 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.