RNA id: TCONS_00030632


Basic Information

Item Value
RNA id TCONS_00030632
length 422
RNA type processed_transcript
GC content 0.56
exon number 2
gene id XLOC_015273
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 12302527 ~ 12406641 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGGAGTAATCTGCCTGCGGATGGAAGAAGAGAGAAGAGATGGAGAGCGGATCGCTACTACGCGAAGCAGGCGGCAGGCACCTCAGCCCCCACCTCGACTGGAAGCGACGAGGACAAGCAGGCCTATTCTCAAGATGCCTACCTTAAGGGTCATGATGCATACAGTGGAAATGCTCGCCATATCCCAGAGCCACCCCCTATATGTTATCCTCGAGTAGACTGCAAGCCCCCGGGGATGGCCCAGGCCACTGAGACATCAGCCCCGGGGGTTGTATCTTCCGATCTAGGATACCGTGTGGAGATACCGGTACCTCCCTCACCTCCACCACCCATTCCAAAAACACAgaccgcagtgtgtgtgtgcaatgaAAGTGTACGGACAGTGGTGGTACCTCCTGATGTTCACATGGGCCTTATGGTC

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005096 GTPase activator activity molecular_function
GO:0005543 phospholipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4944 Predicted to enable GTPase activator activity and phospholipid binding activity. Predicted to act upstream of or within signal transduction. Orthologous to human ARHGAP21 (Rho GTPase activating protein 21).

Ensembl:

ensembl_id ENSDART00000135867

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030618 lncRNA upstream 727984 11648163 ~ 11648838 (+) True XLOC_015267
TCONS_00033490 lncRNA upstream 743499 11629002 ~ 11633323 (+) False XLOC_015266
TCONS_00033491 lncRNA upstream 743499 11629011 ~ 11633323 (+) False XLOC_015266
TCONS_00033492 lncRNA upstream 743499 11629043 ~ 11633323 (+) True XLOC_015266
TCONS_00030616 lncRNA upstream 1167140 11208463 ~ 11209682 (+) True XLOC_015264
TCONS_00033493 lncRNA downstream 257324 12635927 ~ 12637877 (+) True XLOC_015274
TCONS_00030635 lncRNA downstream 419763 12798366 ~ 12802906 (+) True XLOC_015275
TCONS_00033242 lncRNA downstream 469057 12847660 ~ 12852426 (+) True XLOC_015276
TCONS_00033243 lncRNA downstream 968797 13347400 ~ 13351251 (+) False XLOC_015280
TCONS_00033494 lncRNA downstream 968859 13347462 ~ 13351299 (+) True XLOC_015280
TCONS_00030627 mRNA upstream 96314 12255568 ~ 12280508 (+) False XLOC_015272
TCONS_00030628 mRNA upstream 96353 12255575 ~ 12280469 (+) True XLOC_015272
TCONS_00030626 mRNA upstream 373647 11946554 ~ 12003175 (+) True XLOC_015271
TCONS_00030625 mRNA upstream 378525 11946554 ~ 11998297 (+) False XLOC_015271
TCONS_00030623 mRNA upstream 430886 11923615 ~ 11945936 (+) False XLOC_015270
TCONS_00030636 mRNA downstream 468999 12847602 ~ 12956329 (+) False XLOC_015276
TCONS_00030637 mRNA downstream 469011 12847614 ~ 13037544 (+) False XLOC_015276
TCONS_00030638 mRNA downstream 671622 13050225 ~ 13051517 (+) True XLOC_015277
TCONS_00030639 mRNA downstream 678199 13056802 ~ 13148453 (+) False XLOC_015278
TCONS_00030640 mRNA downstream 690565 13069168 ~ 13145704 (+) True XLOC_015278
TCONS_00030621 other upstream 611824 11756924 ~ 11764998 (+) False XLOC_015269
TCONS_00030617 other upstream 1132815 11243886 ~ 11244007 (+) True XLOC_015265
TCONS_00030605 other upstream 1370032 11006657 ~ 11006790 (+) True XLOC_015261
TCONS_00030590 other upstream 2170704 10206001 ~ 10206118 (+) True XLOC_015249
TCONS_00030577 other upstream 2393869 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030633 other downstream 16020 12394623 ~ 12394983 (+) False XLOC_015273
TCONS_00030634 other downstream 22652 12401255 ~ 12404031 (+) True XLOC_015273
TCONS_00030641 other downstream 744963 13123566 ~ 13123682 (+) True XLOC_015279
TCONS_00030650 other downstream 2281753 14660356 ~ 14660546 (+) True XLOC_015290
TCONS_00030651 other downstream 2286565 14665168 ~ 14665353 (+) True XLOC_015291

Expression Profile

//